CX288634

Overview
NameCX288634
Unique NameCX288634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_PYRKO (Prolyl-tRNA synthetase OS=Pyrococcus kodakaraensis GN=proS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.018e-19
Identity = 45/132 (34.09%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  155 AGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMIL-APWCDEEE----VEKDVKARTKG 535
            AGIR + D  D   PG KY  WE+KGVPL IE+GP+D+   +    RRD   KI +   +              +L+  AK+  ++ I+ V T +E       R+ I+  PWC EEE    +E+++ A+  G
Sbjct:  318 AGIRVHVDERD-IRPGRKYYDWELKGVPLRIEVGPRDVEGKKAVLARRDTLEKITVERDNIVEEVRKTLDAIHENLYQRAKEFLESHIKRVDTIEEAKAVFEDRRGIVEIPWCGEEECGLRMEEELDAKMLG 448          

HSP 2 Score: 46.9802 bits (110), Expect = 5.018e-19
Identity = 15/33 (45.45%), Postives = 28/33 (84.85%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDAD 102
            ++ +HGDD+G++LPP +A +QV+ +P+P KD++
Sbjct:  269 VIAIHGDDRGMVLPPTIAPIQVVIVPIPKKDSE 301          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CHLSY (Prolyl-tRNA synthetase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=proS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.018e-19
Identity = 45/145 (31.03%), Postives = 71/145 (48.97%), Query Frame = 2
Query:  107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRD---NGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            +  +M A++ +    +  +R   D  DNYSPG+K++ WE+KGVP+ IE+GPKD+A + V   RRD      K  +P                 +LF  A   R+A    V ++DE  E + +R    A W  +   EK ++  T+
Sbjct:  303 RSLVMAAVEQMTAAWKGRLRFKVDDRDNYSPGYKFNEWELKGVPVRIEVGPKDVAKETVALARRDIPGKAGKSFVPQAGLTERIEALLNEMQTALFQRALAFREAHTADVTSYDELKEQI-ERGFARAYWAGDTADEKRIQEETR 446          

HSP 2 Score: 40.817 bits (94), Expect = 5.018e-19
Identity = 15/37 (40.54%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGI 114
            ++M H DD+GL+LPP++A +QV+ +P+ YK+ + + +
Sbjct:  270 LIMTHSDDEGLVLPPRLAPIQVVVVPI-YKNDEERSL 305          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CHLAA (Prolyl-tRNA synthetase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=proS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.018e-19
Identity = 45/145 (31.03%), Postives = 71/145 (48.97%), Query Frame = 2
Query:  107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRD---NGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            +  +M A++ +    +  +R   D  DNYSPG+K++ WE+KGVP+ IE+GPKD+A + V   RRD      K  +P                 +LF  A   R+A    V ++DE  E + +R    A W  +   EK ++  T+
Sbjct:  303 RSLVMAAVEQMTAAWKGRLRFKVDDRDNYSPGYKFNEWELKGVPVRIEVGPKDVAKETVALARRDIPGKAGKSFVPQAGLTERIEALLNEMQTALFQRALAFREAHTADVTSYDELKEQI-ERGFARAYWAGDTADEKRIQEETR 446          

HSP 2 Score: 40.817 bits (94), Expect = 5.018e-19
Identity = 15/37 (40.54%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGI 114
            ++M H DD+GL+LPP++A +QV+ +P+ YK+ + + +
Sbjct:  270 LIMTHSDDEGLVLPPRLAPIQVVVVPI-YKNDEERSL 305          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP2_BACCR (Prolyl-tRNA synthetase 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=proS2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.019e-19
Identity = 38/112 (33.93%), Postives = 59/112 (52.68%), Query Frame = 2
Query:  188 NYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVK 520
            N +PGWK++ +EMKG+P+ +E+GPKD+  +QV  VRRD   K  +PM                +LF  AK  RD    +   ++E  +   +++  I A WC E   E+ +K
Sbjct:  327 NKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQLEERIPALLEEIHIALFNKAKAFRDENTYVATNFEEMKKIADEKQGFIKAMWCGELACEEKLK 438          

HSP 2 Score: 41.5874 bits (96), Expect = 5.019e-19
Identity = 16/27 (59.26%), Postives = 23/27 (85.19%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            ++MVH D+ GL+LPPKVA VQV+ +P+
Sbjct:  271 LIMVHSDNNGLVLPPKVAPVQVVIVPI 297          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_GRAFK (Prolyl-tRNA synthetase OS=Gramella forsetii (strain KT0803) GN=proS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.523e-19
Identity = 47/137 (34.31%), Postives = 65/137 (47.45%), Query Frame = 2
Query:  125 ALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQR-KMILAPWCDEEEVEKDVKARTK 532
            A +L+K     G+    D  DN  PGWK++ +E++GVPL + IGPKDL    V   RRD   K  +                  SLF  AKQ R+  I  V ++D+F + L ++   I A W    E E  +K  TK
Sbjct:  322 ANELVKELRAVGVSVKFDNNDNQKPGWKFAQYELQGVPLRLAIGPKDLEKGTVELARRDTLTKEFVNRSEVVEKIKALMTEIQDSLFDKAKQYRNEHITEVDSFDDFKKVLKEKGGFISAHWDGTPETENKIKDLTK 458          

HSP 2 Score: 40.4318 bits (93), Expect = 6.523e-19
Identity = 16/48 (33.33%), Postives = 28/48 (58.33%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKL 147
            ++M H DD GL+LPP +A +QV+ +P+   +     I +     V++L
Sbjct:  282 LIMTHSDDNGLVLPPNLAPIQVVIVPIYRSEEQLDQISEVANELVKEL 329          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_ALKOO (Prolyl-tRNA synthetase OS=Alkaliphilus oremlandii (strain OhILAs) GN=proS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.686e-19
Identity = 53/142 (37.32%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVKART 529
            KE ++     L++  +   R   D  DNYSPGWK++ WEMKGVP+ IEIGP+D+ N+Q    RRD   K  + +                +L   AK  RD    IVKT+DE  E +  +   + A WC E   E+ VKA T
Sbjct:  304 KEGVLDKANELRDRLKDKFRVELDDRDNYSPGWKFNEWEMKGVPIRIEIGPRDIENNQAMLFRRDELEKDAVSLDDLEEAVEKLLEDINNNLLYKAKMMRDEKTYIVKTFDEMKEVMEIKPGFVKAMWCGERACEEHVKAET 445          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_EUBE2 (Prolyl-tRNA synthetase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=proS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.486e-19
Identity = 39/126 (30.95%), Postives = 61/126 (48.41%), Query Frame = 2
Query:  155 AGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVE-ALGQRKMILAPWCDEEEVEKDVKART 529
            AG+R   D  D  +PGWK+S  EM+G+P+ +E+GP+D+  +Q   VRRD   KI + +                 +   A+  R+A       +DEF + A  +   I A WC ++  E  +K  T
Sbjct:  320 AGLRVKVDDSDK-NPGWKFSEQEMRGIPVRVEMGPRDIEANQAVIVRRDTREKITVSIDELADRIPEILDTIQKDMLERARAHREAHTYTALNYDEFKDTAANKAGFIKAMWCGDQACEDKIKEDT 444          

HSP 2 Score: 44.2838 bits (103), Expect = 8.486e-19
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFD 120
            ++M HGDD GL+LPPKVA VQV  IP+  K A   G+ D
Sbjct:  273 VIMTHGDDSGLVLPPKVAPVQVDVIPIMQKKA---GVLD 308          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP2_BACCZ (Prolyl-tRNA synthetase 2 OS=Bacillus cereus (strain ZK / E33L) GN=proS2 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.487e-19
Identity = 39/112 (34.82%), Postives = 58/112 (51.79%), Query Frame = 2
Query:  188 NYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVK 520
            N +PGWK++ +EMKG+P+ +E+GPKD+  +QV  VRRD   K  + M                SLF  AK  RD     V  ++E  +   +++  I A WC E   E+ +K
Sbjct:  327 NKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEEIHNSLFNKAKVFRDENTYSVTNFEEMKKIADEKQGFIKAMWCGELACEEKLK 438          

HSP 2 Score: 43.1282 bits (100), Expect = 8.487e-19
Identity = 16/27 (59.26%), Postives = 24/27 (88.89%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            ++MVHGD+ GL++PPKVA VQV+ +P+
Sbjct:  271 LIMVHGDNNGLVMPPKVAPVQVVIVPI 297          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CLOPH (Prolyl-tRNA synthetase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=proS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.104e-18
Identity = 35/113 (30.97%), Postives = 55/113 (48.67%), Query Frame = 2
Query:  194 SPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVKART 529
            SPGWK+S  EM+G+P+ +EIGPKD+  +Q   VRRD   K  + +                 +   A+  RDA      + +EF + +  +   + A WC E   E ++K +T
Sbjct:  330 SPGWKFSEHEMRGIPVRVEIGPKDIEANQAVLVRRDTREKTVVSLDEIDTKIGEILEAMQKEMLERARNHRDAHTYEAHSTEEFADVVANKPGFVKAMWCGERACEDEIKEKT 442          

HSP 2 Score: 43.8986 bits (102), Expect = 1.104e-18
Identity = 19/48 (39.58%), Postives = 31/48 (64.58%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKL 147
            ++MVHGD+ GL+LPP++A  QV+ +P+  K    +G+ +      EKL
Sbjct:  273 LIMVHGDNSGLVLPPRIAPTQVVIVPIMQK---KEGVLEKAAELREKL 317          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CHLL2 (Prolyl-tRNA synthetase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=proS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.435e-18
Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPM-GSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            GI A  D  D  SPGWK++ +E++G+PL IE+GP+DLA  +    RRD   K +LP+  +              +L+  A   R+     VK+++EF  A+ +   ++A W   +E E  +K  TK
Sbjct:  316 GIPAFVDSSDQNSPGWKFAEYELQGIPLRIELGPRDLAGKKCVVARRDTLEKTELPLDDTFSMQVSEILNSIQQNLYDRALSFRNEKTVEVKSYEEFKTAV-ENGFVIAHWDGTDETESKIKEETK 440          

HSP 2 Score: 41.2022 bits (95), Expect = 1.435e-18
Identity = 16/27 (59.26%), Postives = 23/27 (85.19%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            ++M H DD+GL+LPPK+AS QV+ IP+
Sbjct:  267 LIMAHSDDRGLVLPPKLASRQVVVIPI 293          
The following BLAST results are available for this feature:
BLAST of CX288634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
SYP_PYRKO5.018e-1934.09Prolyl-tRNA synthetase OS=Pyrococcus kodakaraensis... [more]
SYP_CHLSY5.018e-1931.03Prolyl-tRNA synthetase OS=Chloroflexus aurantiacus... [more]
SYP_CHLAA5.018e-1931.03Prolyl-tRNA synthetase OS=Chloroflexus aurantiacus... [more]
SYP2_BACCR5.019e-1933.93Prolyl-tRNA synthetase 2 OS=Bacillus cereus (strai... [more]
SYP_GRAFK6.523e-1934.31Prolyl-tRNA synthetase OS=Gramella forsetii (strai... [more]
SYP_ALKOO6.686e-1937.32Prolyl-tRNA synthetase OS=Alkaliphilus oremlandii ... [more]
SYP_EUBE28.486e-1930.95Prolyl-tRNA synthetase OS=Eubacterium eligens (str... [more]
SYP2_BACCZ8.487e-1934.82Prolyl-tRNA synthetase 2 OS=Bacillus cereus (strai... [more]
SYP_CLOPH1.104e-1830.97Prolyl-tRNA synthetase OS=Clostridium phytoferment... [more]
SYP_CHLL21.435e-1833.33Prolyl-tRNA synthetase OS=Chlorobium limicola (str... [more]

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Properties
Property NameValue
Genbank descriptionC02002F06SK IF1 Citrus clementina cDNA clone C02002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288634 ID=CX288634; Name=CX288634; organism=Citrus clementina; type=EST; length=547bp
GTCATGGTGATGGTTCATGGGGATGACAAGGGCTTGATGCTGCCACCCAA
AGTTGCATCTGTGCAAGTAATTGACATTCCTGTGCCTTACAAAGATGCTG
ATACTCAAGGAATTTTTGATGCATGCACTGCAACTGTTGAAAAATTAGTG
TGAGGCAGGTATTCGTGCTAATTCTGACTTTATAGACAACTACTCACCTG
GATGGAAGTACTCACACTGGGAAATGAAAGGTGTCCCCCTTATGATTGAA
ATAGGACCAAAAGACTTGGCAAATGATCAGGTACGTGCTGTTCGCCGTGA
CAACGGAGCAAAAATTGATCTGCCTATGGGCTCCTTGGTCGAGAGAGTAA
AAGAACTTCTTGAGGAGGTTCAAGAAAGCTTGTTTGTTGCTGCAAAACAA
AGACGAGATGCTTGCATTCAAATTGTAAAAACTTGGGATGAATTTGTGGA
GGCTCTTGGCCAAAGGAAAATGATCTTGGCTCCATGGTGTGATGAGGAGG
AGGTGGAGAAAGATGTGAAAGCACGTACCAAGGGTGAGATGGGAGCA
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