CX288634

Overview
NameCX288634
Unique NameCX288634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CHLCH (Prolyl-tRNA synthetase OS=Chlorobium chlorochromatii (strain CaD3) GN=proS PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 2.099e-16
Identity = 41/140 (29.29%), Postives = 67/140 (47.86%), Query Frame = 2
Query:  116 LMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGS-XXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            L HA  +     +AGI A  D  +  SPGWK++ +E++G+PL +E+GP+D+ N      RRD   K ++ +                  +F AA + R      V  +D+F  A+ ++  ++A W    E E  +K  TK
Sbjct:  302 LHHADNIAAALTKAGISAFVDSSEQNSPGWKFAEYELQGIPLRLELGPRDIKNGMCVVARRDTLEKTEIALDDRLVMSINEILNDIQQDMFDAALRFRQERTVQVNNYDDFKVAV-EKGFVIAHWDGTVETEAKIKEETK 440          

HSP 2 Score: 39.2762 bits (90), Expect = 2.099e-16
Identity = 15/34 (44.12%), Postives = 26/34 (76.47%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADT 105
            ++M H DD+GL+LPP++A+ QV+ IP+   D ++
Sbjct:  267 LIMAHSDDRGLVLPPRLATRQVVIIPILKGDKES 300          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_ROSS1 (Prolyl-tRNA synthetase OS=Roseiflexus sp. (strain RS-1) GN=proS PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.100e-16
Identity = 41/145 (28.28%), Postives = 66/145 (45.52%), Query Frame = 2
Query:  107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRD---NGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            +  +M A+Q +    +  +R   D  DN +PG+K++ WE+KGVP+ +EIGPKD+    V   RRD      K  +P                 +L+  A   R+     V T+DE  + + +R      W    E EK ++  T+
Sbjct:  303 RSVVMEAVQRMTAEWKGRLRFKIDDRDNLTPGFKFNEWELKGVPIRVEIGPKDIEKGSVAIARRDQPGREGKSFVPQDGLTDRLTALLEEIQQALYRRALTFREDHTADVATYDELKQQV-ERGFARCYWAGTTEDEKRIQEETR 446          

HSP 2 Score: 42.3578 bits (98), Expect = 2.100e-16
Identity = 15/40 (37.50%), Postives = 28/40 (70.00%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDA 123
            ++M H DD+GL++PP++A  QV+ +P+   DA+   + +A
Sbjct:  270 LIMTHSDDEGLVIPPRLAPTQVVVVPIYRNDAERSVVMEA 309          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_THENV (Prolyl-tRNA synthetase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=proS PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 2.728e-16
Identity = 37/134 (27.61%), Postives = 68/134 (50.75%), Query Frame = 2
Query:  101 ILKEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEE 502
            ++ +F+   +  LK    AG+R + D   + +PGWK+ +WE+KGVPL +E+G +D+   QV   RRD   K  + +G               +L   A +   + I  V++ +E  +A+ + K++  PW  + +
Sbjct:  308 LVMKFVEEVVAALKG---AGLRLHVDDRRDKTPGWKFYYWELKGVPLRLEVGKRDVEKRQVVVTRRDTLEKYAVALGELVDAVRELMKAVEDNLRRRAWEELRSKIVKVQSLEEAKKAIKEGKVVEVPWSGDNQ 438          

HSP 2 Score: 40.4318 bits (93), Expect = 2.728e-16
Identity = 15/33 (45.45%), Postives = 23/33 (69.70%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDAD 102
            M++ HGDD G  LPPK+A +Q+  +P+ Y D +
Sbjct:  273 MLITHGDDGGTTLPPKLAPIQIAVVPIYYSDEE 305          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_PROA2 (Prolyl-tRNA synthetase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=proS PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.729e-16
Identity = 40/128 (31.25%), Postives = 63/128 (49.22%), Query Frame = 2
Query:  152 EAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPM-GSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            + GI A  D  D  SPGWK++ +E++G+P+ +E+GP+D+ +    A RRD G K  L +  S              +LF  A   R+     V ++ EF +A      ++A W   +E E  +K  TK
Sbjct:  314 QKGIAAFVDDSDQNSPGWKFAEYELQGIPVRLELGPRDIQSSTCIAARRDTGEKSKLQLDSSLADQINSLLESIQTNLFNRALSFREKHTLEVSSYSEF-KANIDNGFLVAHWDGTDETEAKIKEETK 440          

HSP 2 Score: 40.0466 bits (92), Expect = 2.729e-16
Identity = 15/27 (55.56%), Postives = 23/27 (85.19%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            ++M H DD+GL+LPPK+A+ QV+ IP+
Sbjct:  267 LIMAHSDDRGLVLPPKLATRQVVIIPI 293          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_PELPB (Prolyl-tRNA synthetase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=proS PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 2.729e-16
Identity = 43/137 (31.39%), Postives = 70/137 (51.09%), Query Frame = 2
Query:  125 ALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMG-SXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            A +L KN    GI +  D  +  SPGWK++ +E++G+P+ IE+GP+D+      A RRD   K +L +  +              S+F  A Q R      V++++EF  A+ ++  ++A W    E E  +KA TK
Sbjct:  309 AQELNKN----GIPSFVDSSEQNSPGWKFAEYELQGIPIRIELGPRDIEKGICIAARRDTLEKTELALDETLPDQISEILNTIQESMFERALQFRTEHTFEVQSYEEFKVAV-EKGFVIAHWDGTAETEAKIKAETK 440          

HSP 2 Score: 40.4318 bits (93), Expect = 2.729e-16
Identity = 18/48 (37.50%), Postives = 30/48 (62.50%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKL 147
            ++M H DD+GL+LPPK+A+ QV+ IP+     D   + +   A  ++L
Sbjct:  267 LIMAHSDDRGLVLPPKLATRQVVIIPI--LRGDKAAVIERANALAQEL 312          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_PYRCJ (Prolyl-tRNA synthetase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=proS PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.545e-16
Identity = 35/117 (29.91%), Postives = 58/117 (49.57%), Query Frame = 2
Query:  152 EAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEE 502
            EAG R + D  D+ +PGWK+ +WE++GVPL +E+G +D+   QV   RRD  AK  + +                +L   A +     I  V+T +    A+ + K++  PW  + +
Sbjct:  323 EAGFRVHVDGRDDKTPGWKFYYWELRGVPLRVEVGKRDVEGRQVVVARRDTLAKYAVAVDELVDAVKALLSEVEANLRRRAVEELRGRIVRVETVEAARAAIREGKVVELPWSGDND 439          

HSP 2 Score: 40.817 bits (94), Expect = 3.545e-16
Identity = 16/48 (33.33%), Postives = 29/48 (60.42%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKL 147
            M++ HGDD G ++PPK+A +QV+ +P+ Y + +   +  A     + L
Sbjct:  274 MLITHGDDAGTVIPPKLAPIQVVVVPIFYGEEEKGVVMPAAEQAAKAL 321          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CHLTE (Prolyl-tRNA synthetase OS=Chlorobium tepidum GN=proS PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.609e-16
Identity = 39/126 (30.95%), Postives = 61/126 (48.41%), Query Frame = 2
Query:  158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPM-GSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            GI    D  +N SPGWK++ +E++G+P+ IE+GP+DL   +    RRD   K +L +                 +L+  A Q R        TW+EF +A  ++  ++A W    E E  +K  TK
Sbjct:  316 GIPTFVDDSENNSPGWKFAEYELQGIPVRIELGPRDLEQGKCIVARRDTFEKTELLLDDELTINIEEILNNIQQNLYDRALQFRLDNTVEATTWEEF-KASVEKGFVIAHWDGTHETEALIKEETK 440          

HSP 2 Score: 42.3578 bits (98), Expect = 4.609e-16
Identity = 17/27 (62.96%), Postives = 23/27 (85.19%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            ++M H DDKGL+LPPK+AS QV+ IP+
Sbjct:  267 LIMAHSDDKGLVLPPKLASRQVVIIPI 293          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_HALSA (Prolyl-tRNA synthetase OS=Halobacterium salinarium GN=proS PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 5.986e-16
Identity = 34/129 (26.36%), Postives = 62/129 (48.06%), Query Frame = 2
Query:  158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQR-KMILAPWCDEEEVEKDVKARTKGEM 541
            G+R + D  D  +PG+K++ WE+ GVP+  EIGP ++ +D+V  V R +G        +               L+ AA  R    ++      + +  +GQ    + APWC +++ E ++K +   E+
Sbjct:  324 GVRVHFDDRDGRNPGFKFNEWELNGVPVRFEIGPNEVEDDEVTVVHRPDGESTVEDRAAIADRVHDHLDEVYDKLYDAAADRLAENVREADNRADILGTIGQHGGYVKAPWCGDQDCEAEIKDQIAAEI 452          

HSP 2 Score: 38.1206 bits (87), Expect = 5.986e-16
Identity = 16/31 (51.61%), Postives = 23/31 (74.19%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKD 96
            +VM H DD+GL+LPP VA  QV+ +P+  +D
Sbjct:  274 LVMSHSDDQGLVLPPTVAPKQVVIVPIWQED 304          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_HALS3 (Prolyl-tRNA synthetase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=proS PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 5.986e-16
Identity = 34/129 (26.36%), Postives = 62/129 (48.06%), Query Frame = 2
Query:  158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQR-KMILAPWCDEEEVEKDVKARTKGEM 541
            G+R + D  D  +PG+K++ WE+ GVP+  EIGP ++ +D+V  V R +G        +               L+ AA  R    ++      + +  +GQ    + APWC +++ E ++K +   E+
Sbjct:  324 GVRVHFDDRDGRNPGFKFNEWELNGVPVRFEIGPNEVEDDEVTVVHRPDGESTVEDRAAIADRVHDHLDEVYDKLYDAAADRLAENVREADNRADILGTIGQHGGYVKAPWCGDQDCEAEIKDQIAAEI 452          

HSP 2 Score: 38.1206 bits (87), Expect = 5.986e-16
Identity = 16/31 (51.61%), Postives = 23/31 (74.19%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKD 96
            +VM H DD+GL+LPP VA  QV+ +P+  +D
Sbjct:  274 LVMSHSDDQGLVLPPTVAPKQVVIVPIWQED 304          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CYTH3 (Prolyl-tRNA synthetase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=proS PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.988e-16
Identity = 38/125 (30.40%), Postives = 56/125 (44.80%), Query Frame = 2
Query:  161 IRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVKARTK 532
            I    D  D YSPG+K++ +E+KGVPL + IG +D+ N  V   RRD   K  +P                 +++  A   R+A   +   +  F   L +    ILA W    E E+ +K  TK
Sbjct:  333 ISVKFDHSDKYSPGFKFAEYELKGVPLRVAIGARDIENGTVELARRDTKEKTTVPQEGLADTIEKLLQEIQENIYKKAFAYREANTFVADDYTTFKTMLDETPGFILAHWDGTPETEEKIKEETK 457          

HSP 2 Score: 40.0466 bits (92), Expect = 5.988e-16
Identity = 16/40 (40.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDA 123
            ++M H DD+GL+LPP +A +QV+ +P+ +K A+   + +A
Sbjct:  281 LIMAHSDDEGLVLPPLLAPIQVVIVPI-FKTAEQLDLIEA 319          
The following BLAST results are available for this feature:
BLAST of CX288634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
SYP_CHLCH2.099e-1629.29Prolyl-tRNA synthetase OS=Chlorobium chlorochromat... [more]
SYP_ROSS12.100e-1628.28Prolyl-tRNA synthetase OS=Roseiflexus sp. (strain ... [more]
SYP_THENV2.728e-1627.61Prolyl-tRNA synthetase OS=Thermoproteus neutrophil... [more]
SYP_PROA22.729e-1631.25Prolyl-tRNA synthetase OS=Prosthecochloris aestuar... [more]
SYP_PELPB2.729e-1631.39Prolyl-tRNA synthetase OS=Pelodictyon phaeoclathra... [more]
SYP_PYRCJ3.545e-1629.91Prolyl-tRNA synthetase OS=Pyrobaculum calidifontis... [more]
SYP_CHLTE4.609e-1630.95Prolyl-tRNA synthetase OS=Chlorobium tepidum GN=pr... [more]
SYP_HALSA5.986e-1626.36Prolyl-tRNA synthetase OS=Halobacterium salinarium... [more]
SYP_HALS35.986e-1626.36Prolyl-tRNA synthetase OS=Halobacterium salinarum ... [more]
SYP_CYTH35.988e-1630.40Prolyl-tRNA synthetase OS=Cytophaga hutchinsonii (... [more]

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Properties
Property NameValue
Genbank descriptionC02002F06SK IF1 Citrus clementina cDNA clone C02002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288634 ID=CX288634; Name=CX288634; organism=Citrus clementina; type=EST; length=547bp
GTCATGGTGATGGTTCATGGGGATGACAAGGGCTTGATGCTGCCACCCAA
AGTTGCATCTGTGCAAGTAATTGACATTCCTGTGCCTTACAAAGATGCTG
ATACTCAAGGAATTTTTGATGCATGCACTGCAACTGTTGAAAAATTAGTG
TGAGGCAGGTATTCGTGCTAATTCTGACTTTATAGACAACTACTCACCTG
GATGGAAGTACTCACACTGGGAAATGAAAGGTGTCCCCCTTATGATTGAA
ATAGGACCAAAAGACTTGGCAAATGATCAGGTACGTGCTGTTCGCCGTGA
CAACGGAGCAAAAATTGATCTGCCTATGGGCTCCTTGGTCGAGAGAGTAA
AAGAACTTCTTGAGGAGGTTCAAGAAAGCTTGTTTGTTGCTGCAAAACAA
AGACGAGATGCTTGCATTCAAATTGTAAAAACTTGGGATGAATTTGTGGA
GGCTCTTGGCCAAAGGAAAATGATCTTGGCTCCATGGTGTGATGAGGAGG
AGGTGGAGAAAGATGTGAAAGCACGTACCAAGGGTGAGATGGGAGCA
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