CX288634

Overview
NameCX288634
Unique NameCX288634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP2_RHOSR (Prolyl-tRNA synthetase 2 OS=Rhodococcus sp. (strain RHA1) GN=proS2 PE=3 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 5.992e-16
Identity = 40/126 (31.75%), Postives = 64/126 (50.79%), Query Frame = 2
Query:  158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRR--DNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKART 529
            G+R + D   + +PG+KY+ WEM+GVP+ +E+GP+DL +  V  V+R  D+G K  +P+ S               L   A   RD   + V  W +F +A+      LA  C     E+++K+ T
Sbjct:  319 GVRTHVDARPHLTPGFKYNEWEMRGVPVRLELGPRDLEDGTVMMVKRLGDDG-KQAVPIDSLPEAMPGVLDDFQAFLLARATAFRDGHARTVDNWTDFADAV-STGWALALHCGIAACEEEIKSLT 442          

HSP 2 Score: 39.6614 bits (91), Expect = 5.992e-16
Identity = 15/27 (55.56%), Postives = 22/27 (81.48%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            +VM HGDDKGL+ PP++A  QV+ +P+
Sbjct:  270 IVMTHGDDKGLVFPPRLAPHQVVIVPI 296          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_FLAJ1 (Prolyl-tRNA synthetase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=proS PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 7.782e-16
Identity = 39/113 (34.51%), Postives = 53/113 (46.90%), Query Frame = 2
Query:  197 PGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEAL-GQRKMILAPWCDEEEVEKDVKARTK 532
            PG+K++ WE+KGVP+ I +GPKDL N      RRDN +K  +                   LF  A   R+  I  V  ++EF E L G+   I A W      E+ +K  TK
Sbjct:  346 PGFKFAEWELKGVPVRIAVGPKDLENGTFEVARRDNLSKEVVAAEKIVDHVNDLLEQIQKDLFDKALTYRNTHITEVNNFEEFKEVLEGKGGFISAHWDGTAATEEKIKDLTK 458          

HSP 2 Score: 40.817 bits (94), Expect = 7.782e-16
Identity = 18/48 (37.50%), Postives = 27/48 (56.25%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKL 147
            ++M H DD+GL+LPP +A +QV+ +P+   D     I  A      KL
Sbjct:  282 LIMTHSDDQGLVLPPNLAPIQVVIVPIHKTDEQLAQITAAVNELTAKL 329          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_PELLD (Prolyl-tRNA synthetase OS=Pelodictyon luteolum (strain DSM 273) GN=proS PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 7.786e-16
Identity = 37/127 (29.13%), Postives = 64/127 (50.39%), Query Frame = 2
Query:  155 AGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMG-SXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            AGI A  D  +  SPGWK++ +E++G+P+ IE+GP+D+      A RRD   K +L +G +               ++  A   R+       +++EF  A+ ++  ++A W    E E+ +K  TK
Sbjct:  315 AGIPAFVDGSEQNSPGWKFAEYELQGIPVRIEVGPRDIEKGICIAARRDTLEKSELQLGETLPGAVQEILDAMQKDMYQKALLFREENTVEASSYEEFKAAV-EKGFVIAHWDGTAETEEKIKEETK 440          

HSP 2 Score: 41.2022 bits (95), Expect = 7.786e-16
Identity = 16/27 (59.26%), Postives = 23/27 (85.19%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            ++M H DD+GL+LPPK+AS QV+ IP+
Sbjct:  267 LIMAHSDDRGLVLPPKLASRQVVIIPI 293          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_METTP (Prolyl-tRNA synthetase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=proS PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 7.787e-16
Identity = 42/119 (35.29%), Postives = 59/119 (49.58%), Query Frame = 2
Query:  197 PGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXS-LFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEE----VEKDVKARTKGE 538
            PG K+  WEM+GVP+ IEIGP+D+ N  V  VRRD G +  LPM                + L+  AK+  D+ I++V + DE   +  Q  +   PWC   E    +E  + A   GE
Sbjct:  334 PGAKFYKWEMRGVPVRIEIGPRDIKNGVVTIVRRD-GVRKTLPMDERLVDAILIEAEELQTVLYNRAKEFMDSKIKLVSSLDE-ARSQVQSGVARVPWCGSVECGHALEDQIGANLLGE 450          

HSP 2 Score: 41.9726 bits (97), Expect = 7.787e-16
Identity = 19/48 (39.58%), Postives = 31/48 (64.58%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKL 147
            ++ VHGDDKGL+LP +VA VQV+ +P+ +   + + I + C +    L
Sbjct:  273 LIAVHGDDKGLVLPWRVAPVQVVIVPIIF--GEREPIIEVCRSIASTL 318          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_METLZ (Prolyl-tRNA synthetase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=proS PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 7.788e-16
Identity = 38/129 (29.46%), Postives = 63/129 (48.84%), Query Frame = 2
Query:  155 AGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEM 541
            AG+R  +D  D   PG KY HWE+ GVPL +E+GP+DL N+Q+    R  G K  +P  +               +   A+    + ++ VKT DE  ++L +  +++  WC E+     ++  T   +
Sbjct:  319 AGLRVKTDARD-MRPGAKYYHWELHGVPLRVELGPRDLDNNQLVCANR-LGVKTTIPRENAADSVKRLLDEAHDQILEKAEDHLSSHLKTVKTVDECNQSL-EENIVIVHWCGEKACADKLEELTNSSL 444          

HSP 2 Score: 38.5058 bits (88), Expect = 7.788e-16
Identity = 16/27 (59.26%), Postives = 21/27 (77.78%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            ++ VHGDDKGL+LP  VA  QV+ IP+
Sbjct:  270 IIAVHGDDKGLVLPATVAPTQVVIIPI 296          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_PYRAR (Prolyl-tRNA synthetase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=proS PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.012e-15
Identity = 37/129 (28.68%), Postives = 63/129 (48.84%), Query Frame = 2
Query:  116 LMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEE 502
            + +A ++ K   EAG+R + D   + +PGWK+  WE+KGVPL +E+G +DL   QV   RRD   K  + +G               +L   A +   + I   +T +    A+ + K++  PW  + +
Sbjct:  311 ISYAREVEKALREAGMRVHIDDRPDKTPGWKFYFWELKGVPLRVEVGKRDLEKRQVVITRRDTLEKYAVGLGELVDAVRGLMRTVEENLRRRAWEELRSRIVRAETVEAAKAAIREGKVVEVPWSGDND 439          

HSP 2 Score: 40.4318 bits (93), Expect = 1.012e-15
Identity = 14/37 (37.84%), Postives = 26/37 (70.27%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGI 114
            M++ HGDD G +LPP++A +QV+ +P+ Y + +   +
Sbjct:  274 MLITHGDDAGTVLPPRLAPIQVVIVPIFYGEEEAASV 310          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CALMQ (Prolyl-tRNA synthetase OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=proS PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.012e-15
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 2
Query:  155 AGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAK 313
            AG+R + D   + +PGWKY HWE+KGVP+ +E+GP D+ ++ V   RRD   K
Sbjct:  319 AGVRVHVDDRRDKTPGWKYYHWELKGVPIRLEVGPSDVKDNAVTLTRRDTFEK 371          

HSP 2 Score: 41.9726 bits (97), Expect = 1.012e-15
Identity = 16/29 (55.17%), Postives = 24/29 (82.76%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPY 90
            M+ V+GDD+GL+LPP+ A +QV+ IP+ Y
Sbjct:  271 MIAVNGDDRGLLLPPRYAPIQVVVIPIMY 299          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_ROSCS (Prolyl-tRNA synthetase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=proS PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.012e-15
Identity = 40/145 (27.59%), Postives = 66/145 (45.52%), Query Frame = 2
Query:  107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRD---NGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            +  +M A+Q +    +  +R   D  DN +PG+K++ WE+KGVP+ +EIGPKD+    V   RRD      K  +P                 +L+  A   R+     V T++E  + + +R      W    E EK ++  T+
Sbjct:  303 RSVVMEAVQRMTAEWKGLLRFKVDDRDNLTPGFKFNEWELKGVPIRVEIGPKDIEKGSVAIARRDQPGREGKSFVPQEGLTARLAALLEEIQQALYRRALAFRETHTADVTTYEELKQQV-ERGFARCYWAGTMEDEKRIQEETR 446          

HSP 2 Score: 42.3578 bits (98), Expect = 1.012e-15
Identity = 15/40 (37.50%), Postives = 28/40 (70.00%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDA 123
            ++M H DD+GL++PP++A  QV+ +P+   DA+   + +A
Sbjct:  270 LIMTHSDDEGLVIPPRLAPTQVVVVPIYRNDAERSVVMEA 309          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_THEVO (Prolyl-tRNA synthetase OS=Thermoplasma volcanium GN=proS PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.013e-15
Identity = 35/125 (28.00%), Postives = 58/125 (46.40%), Query Frame = 2
Query:  158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            GIR + D  DNY+PG+KY+ WEM+GVPL IE+G ++L    V    R+   K  +                   +   AK+  ++ +    + D+F     +  +I A WC  +E    ++  T+
Sbjct:  310 GIRCHVDNRDNYTPGYKYNDWEMRGVPLRIEVGERELKEKTVTLAARNIRGKKTVQREKLVYEVPDMLDLVKEKITEDAKKTFNSLVVSASSLDDF----KKEGLIKAFWCGSKECSDKIENETE 430          

HSP 2 Score: 43.5134 bits (101), Expect = 1.013e-15
Identity = 15/28 (53.57%), Postives = 24/28 (85.71%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVP 87
            ++ +HGDDKGL+LPP +A +QV+ +P+P
Sbjct:  264 IIGIHGDDKGLILPPAIAPIQVVIVPIP 291          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_DEIRA (Prolyl-tRNA synthetase OS=Deinococcus radiodurans GN=proS PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.314e-15
Identity = 37/125 (29.60%), Postives = 53/125 (42.40%), Query Frame = 2
Query:  158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            G+R   D  D  + G+KY+ WE+KGVP+ IE+GP+DL +  +    R +  K  LP                  L   A     A    V ++D F   +     + A  C E   EK +K  TK
Sbjct:  334 GLRVKVDGRDGVTNGFKYNDWELKGVPVRIELGPRDLESGVLVVKNRHSEDKETLPRAEAVSGMSARLDTIHDFLMKRATDFLLANTAEVDSYDAFQREIEAGHWVRAYHCGEPACEKSIKEDTK 458          

HSP 2 Score: 46.595 bits (109), Expect = 1.314e-15
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKL 147
            ++M HGDD GLM+PP++A +QV+ IPV  KD      FD      EKL
Sbjct:  284 IIMTHGDDSGLMMPPRIAPIQVVVIPVGRKDN-----FDQMVQEGEKL 326          
The following BLAST results are available for this feature:
BLAST of CX288634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
SYP2_RHOSR5.992e-1631.75Prolyl-tRNA synthetase 2 OS=Rhodococcus sp. (strai... [more]
SYP_FLAJ17.782e-1634.51Prolyl-tRNA synthetase OS=Flavobacterium johnsonia... [more]
SYP_PELLD7.786e-1629.13Prolyl-tRNA synthetase OS=Pelodictyon luteolum (st... [more]
SYP_METTP7.787e-1635.29Prolyl-tRNA synthetase OS=Methanosaeta thermophila... [more]
SYP_METLZ7.788e-1629.46Prolyl-tRNA synthetase OS=Methanocorpusculum labre... [more]
SYP_PYRAR1.012e-1528.68Prolyl-tRNA synthetase OS=Pyrobaculum arsenaticum ... [more]
SYP_CALMQ1.012e-1547.17Prolyl-tRNA synthetase OS=Caldivirga maquilingensi... [more]
SYP_ROSCS1.012e-1527.59Prolyl-tRNA synthetase OS=Roseiflexus castenholzii... [more]
SYP_THEVO1.013e-1528.00Prolyl-tRNA synthetase OS=Thermoplasma volcanium G... [more]
SYP_DEIRA1.314e-1529.60Prolyl-tRNA synthetase OS=Deinococcus radiodurans ... [more]

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Properties
Property NameValue
Genbank descriptionC02002F06SK IF1 Citrus clementina cDNA clone C02002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288634 ID=CX288634; Name=CX288634; organism=Citrus clementina; type=EST; length=547bp
GTCATGGTGATGGTTCATGGGGATGACAAGGGCTTGATGCTGCCACCCAA
AGTTGCATCTGTGCAAGTAATTGACATTCCTGTGCCTTACAAAGATGCTG
ATACTCAAGGAATTTTTGATGCATGCACTGCAACTGTTGAAAAATTAGTG
TGAGGCAGGTATTCGTGCTAATTCTGACTTTATAGACAACTACTCACCTG
GATGGAAGTACTCACACTGGGAAATGAAAGGTGTCCCCCTTATGATTGAA
ATAGGACCAAAAGACTTGGCAAATGATCAGGTACGTGCTGTTCGCCGTGA
CAACGGAGCAAAAATTGATCTGCCTATGGGCTCCTTGGTCGAGAGAGTAA
AAGAACTTCTTGAGGAGGTTCAAGAAAGCTTGTTTGTTGCTGCAAAACAA
AGACGAGATGCTTGCATTCAAATTGTAAAAACTTGGGATGAATTTGTGGA
GGCTCTTGGCCAAAGGAAAATGATCTTGGCTCCATGGTGTGATGAGGAGG
AGGTGGAGAAAGATGTGAAAGCACGTACCAAGGGTGAGATGGGAGCA
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