CX288634

Overview
NameCX288634
Unique NameCX288634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CLOCE (Prolyl-tRNA synthetase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=proS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 52/142 (36.62%), Postives = 68/142 (47.89%), Query Frame = 2
Query:  107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVKART 529
            KE ++     LK    A  R   D  D   PGWK+S +EMKGVPL IEIGPKD+  +Q   VRRDN  KI + + +              SL   A++ RD    I  T +EF + +      +   WC E E E  VK +T
Sbjct:  303 KEGVLEKANELKQKLSAKFRVKMDDSDKM-PGWKFSEYEMKGVPLRIEIGPKDIEKNQAVLVRRDNREKIFVSLDNLEETVVNTLADVQKSLLEKARELRDKKTYIAATLEEFDQIINSTPGFVKGMWCGERECEDLVKEKT 443          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_PYRIL (Prolyl-tRNA synthetase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=proS PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.708e-15
Identity = 35/118 (29.66%), Postives = 61/118 (51.69%), Query Frame = 2
Query:  152 EAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAA-KQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEE 502
            + GIR + D   + +PGWK+ +WE+KGVPL IE+G +D+   QV   RRD   K  + +G               +L   A +  R+  +++ K  ++   A+ + K++  PW  ++E
Sbjct:  323 DVGIRIHIDDRRDKTPGWKFYYWELKGVPLRIEVGRRDIEKRQVVVTRRDTLEKYAVSLGELVDAVKQLMSVVEDNLRKRAWEDLRNRLVKVEKV-EDAKNAIREGKVVEVPWSGDDE 439          

HSP 2 Score: 39.6614 bits (91), Expect = 1.708e-15
Identity = 15/33 (45.45%), Postives = 24/33 (72.73%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDAD 102
            M++ HGDD G  LPPK+A +QV+ +P+ Y + +
Sbjct:  274 MLITHGDDGGTTLPPKLAPIQVVIVPIFYGEEE 306          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_SOLUE (Prolyl-tRNA synthetase OS=Solibacter usitatus (strain Ellin6076) GN=proS PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.709e-15
Identity = 39/128 (30.47%), Postives = 60/128 (46.88%), Query Frame = 2
Query:  161 IRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEAL--------GQRKMILAPWCDEEEVEKDVK 520
            I A  D  +  SPG K+ HWE +GVP+++E+GP+DLA+ ++   RRD G K  +                   L+  AK R  A   +  + +E VEA+        G  K ++A   DE   +  +K
Sbjct:  316 IGAKVDDREGQSPGAKFFHWERRGVPVVLELGPRDLASGKIVLKRRDTGTKEPIDQSEVGAKVAAALEDMQKGLYTRAKDRMKANTVLANSIEE-VEAILKDATAEKGGGKFVMAHIKDEPACDARLK 442          

HSP 2 Score: 42.743 bits (99), Expect = 1.709e-15
Identity = 16/40 (40.00%), Postives = 28/40 (70.00%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDA 123
            ++M H DDKGL+LPPK+A V+ + +P+  K+ +   + +A
Sbjct:  269 LIMTHSDDKGLVLPPKLAPVKSVIVPIYRKEEERAAVLEA 308          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_METHJ (Prolyl-tRNA synthetase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=proS PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.709e-15
Identity = 44/133 (33.08%), Postives = 61/133 (45.86%), Query Frame = 2
Query:  107 KEFLMHALQLLKN*CE-AGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEE 502
            +E +M A +LL+   + AG R   D  D   PG KY +WEM+GVPL +EIGP+DL N  V  V R +G K  LP                  L   AK      + +VK  +  V  +  + ++   WC   E
Sbjct:  302 EEEIMQAAELLEKELQNAGYRVKIDTRD-LRPGAKYYYWEMRGVPLRLEIGPRDLDNGVVMGVLR-SGGKESLPRADIIAEVNRKMTEFTAILQERAKTHIKDHLVMVKE-ESLVNEMVSKGVVAVHWCGNRE 431          

HSP 2 Score: 43.8986 bits (102), Expect = 1.709e-15
Identity = 17/35 (48.57%), Postives = 27/35 (77.14%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQ 108
            ++ +HGDD+GLMLPP+VA VQ++ +PV  K  + +
Sbjct:  270 LISMHGDDRGLMLPPEVAPVQIVIVPVIMKKREEE 304          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_METMJ (Prolyl-tRNA synthetase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=proS PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.709e-15
Identity = 37/109 (33.94%), Postives = 54/109 (49.54%), Query Frame = 2
Query:  197 PGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKA 523
            PG KY HWEM+GVPL +E+GP+D+  + V AV R  G K  L                   L  AA+Q   A I   +T +E  EA+ +  + +  WC  +E  + ++A
Sbjct:  332 PGAKYYHWEMRGVPLRVEVGPRDIDANTVVAVAR-TGKKTTLDRRGVVEGITSVLAEFGEDLSQAARQAMAARITAAETLEETAEAV-KSGVAVVHWCGSQECAEKIEA 438          

HSP 2 Score: 41.5874 bits (96), Expect = 1.709e-15
Identity = 16/27 (59.26%), Postives = 24/27 (88.89%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            +V VHGDDKGL+LPP+VA ++V+ +P+
Sbjct:  270 VVSVHGDDKGLVLPPEVAPLEVVIVPI 296          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_PHYAS (Prolyl-tRNA synthetase OS=Phytoplasma australiense GN=proS PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.710e-15
Identity = 35/116 (30.17%), Postives = 58/116 (50.00%), Query Frame = 2
Query:  182 IDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKART 529
            + N +PGWK+S +E+KGVPL IEIG +DLA  +V   +R N +K +    +               ++  A++  +A  +   T+ EF + L Q+K  +A      + E  +K  T
Sbjct:  326 LQNKTPGWKFSQYELKGVPLRIEIGARDLAQGEVTIFQRYNNSKNNFSKNTFKAEIPKLLKTIHDKMYQKAQKHLEANRRQASTYQEFKDHL-QKKGYVAMSISGMDAEIKIKTET 440          

HSP 2 Score: 43.1282 bits (100), Expect = 1.710e-15
Identity = 20/48 (41.67%), Postives = 32/48 (66.67%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKD----ADTQGIFDACTAT 135
            ++MVH DD+GL+LPP +A +Q++ IP+  K+    A+ + IFD    T
Sbjct:  272 LIMVHSDDEGLILPPYIAPIQIVIIPLQPKNELVQAEAKKIFDDLKTT 319          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CHLT3 (Prolyl-tRNA synthetase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=proS PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.221e-15
Identity = 40/140 (28.57%), Postives = 71/140 (50.71%), Query Frame = 2
Query:  116 LMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXS-LFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            L  A++L K    AG++   D  +  +PGWK++ +E++G+P+ IE+GP+D+A  +    RRD   K  L + +              + LF  A + R+   ++V T++E ++A  +    +A W    E E  +K  TK
Sbjct:  302 LEKAVELEKMLKAAGVQVFLDDSEQNTPGWKFAEYELQGIPVRIELGPRDVAAGKCVVARRDTSEKETLEIDTAFPQKIKDLLDSIQTGLFERALRFREEKTKVVTTYEE-LKAQVEVGFAVAHWDGTPETEAKIKEETK 440          

HSP 2 Score: 40.4318 bits (93), Expect = 2.221e-15
Identity = 15/27 (55.56%), Postives = 22/27 (81.48%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            ++M H DDKGL+LPPK+AS Q + +P+
Sbjct:  267 LIMAHSDDKGLVLPPKLASRQAVIVPI 293          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_BACV8 (Prolyl-tRNA synthetase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=proS PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.884e-15
Identity = 37/125 (29.60%), Postives = 59/125 (47.20%), Query Frame = 2
Query:  158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            GI    D  DN  PG+K++ +E+KGVP+ + +G +DL N+ +  +RRD   K                     +++  A   R+  I  V ++D+F E + +   ILA W    E E  +K  TK
Sbjct:  335 GISVKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIEEYVQQLLEDIQNNIYQKALNYRNEHIVKVDSYDDFKEQIEKGGFILAHWDGTPETEDRIKEETK 459          

HSP 2 Score: 39.2762 bits (90), Expect = 2.884e-15
Identity = 17/40 (42.50%), Postives = 27/40 (67.50%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDA 123
            ++M H DD GL+LPP +A +QV+ +P+ YK+ +     DA
Sbjct:  284 LIMTHSDDNGLVLPPHLAPIQVVIVPI-YKNDEMLKKIDA 322          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_MYCS5 (Prolyl-tRNA synthetase OS=Mycoplasma synoviae (strain 53) GN=proS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.886e-15
Identity = 37/114 (32.46%), Postives = 60/114 (52.63%), Query Frame = 2
Query:  188 NYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKART 529
            N SPG+K S  E++GVPL IE+GP+DL N+ V  VRRD   K  + + +              +L+ AAKQR +        +++F + +   K ++ P+C   + E ++K  T
Sbjct:  326 NKSPGFKASQSEIEGVPLRIEVGPRDLENNCVTFVRRDTLEKTKVDLENVKKEVNNYLKLIQNNLYQAAKQRLEENTVYAYNYEDFKKHIVDNKFVVVPFCCVTKKEIEIKEET 439          

HSP 2 Score: 35.039 bits (79), Expect = 2.886e-15
Identity = 11/22 (50.00%), Postives = 21/22 (95.45%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQV 69
            ++MVHGD++G+++PPK+A ++V
Sbjct:  269 IIMVHGDNRGVIIPPKIAPIKV 290          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_HALLT (Prolyl-tRNA synthetase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=proS PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.748e-15
Identity = 36/131 (27.48%), Postives = 61/131 (46.56%), Query Frame = 2
Query:  152 EAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQR-KMILAPWCDEEEVEKDVKARTKGEM 541
            +AGIR   D  D  +PG+K++  E+ GVPL IEIGP ++ + ++  V R +G  +                     L+  A++  D  ++      + +  LGQ    + APWC +E  E+ +K     E+
Sbjct:  324 DAGIRVELDDRDGRNPGFKFNEHELNGVPLRIEIGPHEVEDGELTLVHRPDGESVVEDREGVVATVQDHFDEVYAKLYATAEETLDGAVREADDRADILGTLGQHGGYVTAPWCGDEACEEPIKEPMAAEI 454          

HSP 2 Score: 36.5798 bits (83), Expect = 3.748e-15
Identity = 14/31 (45.16%), Postives = 23/31 (74.19%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKD 96
            ++M H D++GL+LPP VA  QV+ +P+  +D
Sbjct:  276 LIMTHSDEQGLVLPPGVAPEQVVVVPIWQED 306          
The following BLAST results are available for this feature:
BLAST of CX288634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
SYP_CLOCE1.541e-1536.62Prolyl-tRNA synthetase OS=Clostridium cellulolytic... [more]
SYP_PYRIL1.708e-1529.66Prolyl-tRNA synthetase OS=Pyrobaculum islandicum (... [more]
SYP_SOLUE1.709e-1530.47Prolyl-tRNA synthetase OS=Solibacter usitatus (str... [more]
SYP_METHJ1.709e-1533.08Prolyl-tRNA synthetase OS=Methanospirillum hungate... [more]
SYP_METMJ1.709e-1533.94Prolyl-tRNA synthetase OS=Methanoculleus marisnigr... [more]
SYP_PHYAS1.710e-1530.17Prolyl-tRNA synthetase OS=Phytoplasma australiense... [more]
SYP_CHLT32.221e-1528.57Prolyl-tRNA synthetase OS=Chloroherpeton thalassiu... [more]
SYP_BACV82.884e-1529.60Prolyl-tRNA synthetase OS=Bacteroides vulgatus (st... [more]
SYP_MYCS52.886e-1532.46Prolyl-tRNA synthetase OS=Mycoplasma synoviae (str... [more]
SYP_HALLT3.748e-1527.48Prolyl-tRNA synthetase OS=Halorubrum lacusprofundi... [more]

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Properties
Property NameValue
Genbank descriptionC02002F06SK IF1 Citrus clementina cDNA clone C02002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288634 ID=CX288634; Name=CX288634; organism=Citrus clementina; type=EST; length=547bp
GTCATGGTGATGGTTCATGGGGATGACAAGGGCTTGATGCTGCCACCCAA
AGTTGCATCTGTGCAAGTAATTGACATTCCTGTGCCTTACAAAGATGCTG
ATACTCAAGGAATTTTTGATGCATGCACTGCAACTGTTGAAAAATTAGTG
TGAGGCAGGTATTCGTGCTAATTCTGACTTTATAGACAACTACTCACCTG
GATGGAAGTACTCACACTGGGAAATGAAAGGTGTCCCCCTTATGATTGAA
ATAGGACCAAAAGACTTGGCAAATGATCAGGTACGTGCTGTTCGCCGTGA
CAACGGAGCAAAAATTGATCTGCCTATGGGCTCCTTGGTCGAGAGAGTAA
AAGAACTTCTTGAGGAGGTTCAAGAAAGCTTGTTTGTTGCTGCAAAACAA
AGACGAGATGCTTGCATTCAAATTGTAAAAACTTGGGATGAATTTGTGGA
GGCTCTTGGCCAAAGGAAAATGATCTTGGCTCCATGGTGTGATGAGGAGG
AGGTGGAGAAAGATGTGAAAGCACGTACCAAGGGTGAGATGGGAGCA
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