CX288634

Overview
NameCX288634
Unique NameCX288634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CHLPD (Prolyl-tRNA synthetase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=proS PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.750e-15
Identity = 38/126 (30.16%), Postives = 61/126 (48.41%), Query Frame = 2
Query:  158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPM-GSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            GI A  D  +  SPGWK++ +E++G+PL IE+GP+D+ N      RRD   K +L +  +              +LF  A + R+       ++ EF E + +   ++A W    E E  +K  TK
Sbjct:  316 GIPAFVDDSEQNSPGWKFAEYELQGIPLRIELGPRDIQNGTCIVARRDTLEKTELALDDTLSVSISEILNAIQQNLFDRALEFRNEHTFEASSYSEFREMV-ENGFVIAHWDGTAETEAKIKEETK 440          

HSP 2 Score: 40.0466 bits (92), Expect = 3.750e-15
Identity = 15/27 (55.56%), Postives = 23/27 (85.19%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            ++M H DD+GL+LPPK+A+ QV+ IP+
Sbjct:  267 LIMAHSDDRGLVLPPKLATRQVVIIPI 293          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_EUBR3 (Prolyl-tRNA synthetase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=proS PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 4.874e-15
Identity = 40/133 (30.08%), Postives = 60/133 (45.11%), Query Frame = 2
Query:  137 LKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK--MILAPWCDEEEVEKDVKART 529
            LK+      R   D  D  +PGWK++  E++G+   IEIGPKD+  +Q   VRRD   KI + +                 +   AK    + I     ++EF +A+ + K   I A WC +E  E  +K  T
Sbjct:  313 LKDKLSKDFRVKIDATDK-TPGWKFAAQEVQGISTRIEIGPKDIEKNQCVIVRRDTREKIVVSLDEVNEKLAEVLETMQNDMLEKAKAFLASHINDAHDYNEF-KAIAETKPGFIRAMWCGDEACENKIKEDT 443          

HSP 2 Score: 43.8986 bits (102), Expect = 4.874e-15
Identity = 21/48 (43.75%), Postives = 29/48 (60.42%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKL 147
            ++MVHGDD GL+LPPK+A  QV+ IP+        G+ D      +KL
Sbjct:  273 IIMVHGDDSGLVLPPKIAPTQVMVIPI---QQQKDGVLDKAYDLKDKL 317          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_PROVI (Prolyl-tRNA synthetase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=proS PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 8.227e-15
Identity = 36/128 (28.12%), Postives = 63/128 (49.22%), Query Frame = 2
Query:  152 EAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPM-GSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            E GI A  D  +  SPGWK++ +E++G+P+ IE+GP+D+      A RRD   K +L +  +               +F  A + R+   + V  ++ F  A+ +   ++A W    E E+ +K  T+
Sbjct:  314 ENGIPAFVDDSEQNSPGWKFAEYELQGIPVRIEVGPRDIDKGVCIAARRDTLEKTELQLDATLAVQVSGMLSAMQADMFQKALRFREENTREVTDYETFKSAV-EEGFVIAHWDGTAETEEKIKEETR 440          

HSP 2 Score: 40.0466 bits (92), Expect = 8.227e-15
Identity = 15/27 (55.56%), Postives = 23/27 (85.19%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            ++M H DD+GL+LPPK+A+ QV+ IP+
Sbjct:  267 LIMAHSDDRGLVLPPKLATRQVVIIPI 293          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_METM5 (Prolyl-tRNA synthetase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=proS PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 8.237e-15
Identity = 46/156 (29.49%), Postives = 76/156 (48.72%), Query Frame = 2
Query:  107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQ---------RKMILAPWCD---EEEVEKDVKARTKGE 538
            +E +M  ++ L N  ++  R + D  D   PG KY+ WE+KGVPL IE+GP+D+ N Q   VRRD G KI +   +              +L + A ++    + +V  ++  V AL +         + +IL P+ +    EE E+ + A   G+
Sbjct:  292 EEIVMDKIKELNNTLKSEFRVHLDDRD-IRPGRKYNDWEIKGVPLRIELGPRDIENGQALIVRRDTGEKITVEYSNILEEVEKIVSMYKENLKIKADEKIKNFLTVV-NFESDVNALSEKVKAALLENKGIILIPFDESVYNEEFEELIDASVLGQ 445          

HSP 2 Score: 37.7354 bits (86), Expect = 8.237e-15
Identity = 14/30 (46.67%), Postives = 24/30 (80.00%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYK 93
            ++ VHGD+KGL++P  VA +Q++ IP+ +K
Sbjct:  260 LISVHGDEKGLVIPVDVAPIQIVLIPLLFK 289          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_METMP (Prolyl-tRNA synthetase OS=Methanococcus maripaludis GN=proS PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.070e-14
Identity = 47/154 (30.52%), Postives = 76/154 (49.35%), Query Frame = 2
Query:  107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQI------VKTWDEFVEA--LGQRKMILAPWCD---EEEVEKDVKARTKG 535
            +E +M  ++ L N  ++  R + D  D   PG KY+ WE+KGVPL IE+GP+D+ N     VRRD G KI +   +              +L + A+++  + I +      V +  E V+A  L  + +IL P+ +    EE E+ + A   G
Sbjct:  292 EEIVMDKIKELNNTLKSEFRVHLDDRD-IRPGRKYNDWELKGVPLRIELGPRDIENGHALIVRRDTGEKITVEYSNILEEVEKIVSMYKENLKLKAEEKVKSFITVLDFENDVNSLSEKVKAKLLENKGIILIPFNESIYNEEFEELIDASVLG 444          

HSP 2 Score: 37.7354 bits (86), Expect = 1.070e-14
Identity = 14/30 (46.67%), Postives = 24/30 (80.00%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYK 93
            ++ VHGD+KGL++P  VA +Q++ IP+ +K
Sbjct:  260 LISVHGDEKGLVIPVDVAPIQIVLIPLLFK 289          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_THEAC (Prolyl-tRNA synthetase OS=Thermoplasma acidophilum GN=proS PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.070e-14
Identity = 34/125 (27.20%), Postives = 57/125 (45.60%), Query Frame = 2
Query:  161 IRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFV-AAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            IR   D  +NY+PG+K++ WEM+GVPL IEIG +++ N  +    R+   K+ +                   +   A K  +D   +  K     +E   +  +I A WC  +E    ++A T+
Sbjct:  311 IRVKVDDRENYTPGYKFNDWEMRGVPLRIEIGEREVKNRTLTISMRNIQGKLTIERSKLIYEVPDTLIRIREKMMENAQKVFKDHVFRATK-----LEEFNRDGLITAFWCGSKECSDKIEAETE 430          

HSP 2 Score: 44.669 bits (104), Expect = 1.070e-14
Identity = 18/28 (64.29%), Postives = 24/28 (85.71%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVP 87
            ++ +HGDDKGL+LPP VA +QVI IP+P
Sbjct:  264 IIGIHGDDKGLVLPPDVAPIQVIIIPIP 291          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_PICTO (Prolyl-tRNA synthetase OS=Picrophilus torridus GN=proS PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.390e-14
Identity = 28/72 (38.89%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDL 322
            KE L ++ ++L    +  +RA  D  +NY+PG+KY+ WEM+GVPL IEIG +++ +  V  V R N  ++++
Sbjct:  296 KEVLDYSGKILSMLKDINVRAEIDSRENYTPGYKYNDWEMRGVPLRIEIGSREMESSTVTVVSRLNKKRLNI 367          

HSP 2 Score: 38.891 bits (89), Expect = 1.390e-14
Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYK 93
            ++ +HGDD GL+LP  +A VQ I IP+P K
Sbjct:  264 VIGIHGDDTGLILPASIAPVQAIIIPIPGK 293          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_NANEQ (Prolyl-tRNA synthetase OS=Nanoarchaeum equitans GN=proS PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.338e-14
Identity = 40/126 (31.75%), Postives = 62/126 (49.21%), Query Frame = 2
Query:  164 RANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEM 541
            R   D  D  +PG+KY ++++ GVPL I+IG K++ N+ +  VRRDN  K  + + +               L   AK   +  +  VKT+DE  EA+ Q K+  AP+C  E     +K     E+
Sbjct:  381 RVYLDSDDTKTPGYKYYYYDLIGVPLRIDIGLKEVENNSITIVRRDNKKKYTISL-NELEKIDQIFKEMEEDLKQKAKSFVNDMVVRVKTFDELKEAIEQNKIAKAPFCMRESCANQIKELLHAEV 505          

HSP 2 Score: 33.4982 bits (75), Expect = 2.338e-14
Identity = 16/32 (50.00%), Postives = 24/32 (75.00%), Query Frame = 1
Query:   19 GDDKGLMLPPKVASVQVIDIPVPYKDADTQGI 114
            GDD GL++P K+A +Q++ IP+  KD DT+ I
Sbjct:  336 GDDLGLVMPYKIAPIQIVIIPILGKD-DTKVI 366          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_METS3 (Prolyl-tRNA synthetase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=proS PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.346e-14
Identity = 40/142 (28.17%), Postives = 69/142 (48.59%), Query Frame = 2
Query:  107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMG-SXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKART 529
            +E L    +L K    AG+R N D  D   PG K+  WE+KG P+ +E+GP+DL N++  A+RRD   KI+L +  +              +L  +AK+     I+     DE  + + +  ++   WC + +  + ++  T
Sbjct:  294 EEVLAKCEELKKEFEAAGLRVNIDNRD-IRPGKKFYDWELKGTPIKLELGPRDLENNKTIAMRRDQLEKIELDLDENLVSNVIRLIDELNENLAESAKEFHTDHIKFASDIDEVRKLIEEGNVVAVNWCGDTDCGEKIEEIT 434          

HSP 2 Score: 36.1946 bits (82), Expect = 2.346e-14
Identity = 13/27 (48.15%), Postives = 21/27 (77.78%), Query Frame = 1
Query:   13 VHGDDKGLMLPPKVASVQVIDIPVPYK 93
            +HGD+KGL LPP+++  Q+  IP+ +K
Sbjct:  264 IHGDEKGLRLPPEISPKQITIIPILFK 290          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_MYXXD (Prolyl-tRNA synthetase OS=Myxococcus xanthus (strain DK 1622) GN=proS PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 3.046e-14
Identity = 42/126 (33.33%), Postives = 59/126 (46.83%), Query Frame = 2
Query:  152 EAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKART 529
            +AG+    D  D  SPG+KY+  E+ G  L IE+GPKDLA +    VRRD   K  + +                 LF  AK  RD+    V +++E  E   Q   +LA W  + +VE  +K  T
Sbjct:  324 KAGLGVVLDDDDTKSPGFKYNEHELIGTCLRIELGPKDLAKNSCVMVRRDVRQKEFVSLDEAVSKAQAMLDAMQKDLFTKAKSFRDSHTFEVNSYEELKEKADQ-GFLLAHWNLDPKVEARIKEET 448          

HSP 2 Score: 38.891 bits (89), Expect = 3.046e-14
Identity = 15/35 (42.86%), Postives = 25/35 (71.43%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQ 108
            ++M H DD GL++PPK+A+  V+ IP+  K +D +
Sbjct:  273 LIMTHSDDAGLIVPPKLAATHVVIIPIFGKASDAE 307          
The following BLAST results are available for this feature:
BLAST of CX288634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
SYP_CHLPD3.750e-1530.16Prolyl-tRNA synthetase OS=Chlorobium phaeobacteroi... [more]
SYP_EUBR34.874e-1530.08Prolyl-tRNA synthetase OS=Eubacterium rectale (str... [more]
SYP_PROVI8.227e-1528.13Prolyl-tRNA synthetase OS=Prosthecochloris vibriof... [more]
SYP_METM58.237e-1529.49Prolyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYP_METMP1.070e-1430.52Prolyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYP_THEAC1.070e-1427.20Prolyl-tRNA synthetase OS=Thermoplasma acidophilum... [more]
SYP_PICTO1.390e-1438.89Prolyl-tRNA synthetase OS=Picrophilus torridus GN=... [more]
SYP_NANEQ2.338e-1431.75Prolyl-tRNA synthetase OS=Nanoarchaeum equitans GN... [more]
SYP_METS32.346e-1428.17Prolyl-tRNA synthetase OS=Methanobrevibacter smith... [more]
SYP_MYXXD3.046e-1433.33Prolyl-tRNA synthetase OS=Myxococcus xanthus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC02002F06SK IF1 Citrus clementina cDNA clone C02002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288634 ID=CX288634; Name=CX288634; organism=Citrus clementina; type=EST; length=547bp
GTCATGGTGATGGTTCATGGGGATGACAAGGGCTTGATGCTGCCACCCAA
AGTTGCATCTGTGCAAGTAATTGACATTCCTGTGCCTTACAAAGATGCTG
ATACTCAAGGAATTTTTGATGCATGCACTGCAACTGTTGAAAAATTAGTG
TGAGGCAGGTATTCGTGCTAATTCTGACTTTATAGACAACTACTCACCTG
GATGGAAGTACTCACACTGGGAAATGAAAGGTGTCCCCCTTATGATTGAA
ATAGGACCAAAAGACTTGGCAAATGATCAGGTACGTGCTGTTCGCCGTGA
CAACGGAGCAAAAATTGATCTGCCTATGGGCTCCTTGGTCGAGAGAGTAA
AAGAACTTCTTGAGGAGGTTCAAGAAAGCTTGTTTGTTGCTGCAAAACAA
AGACGAGATGCTTGCATTCAAATTGTAAAAACTTGGGATGAATTTGTGGA
GGCTCTTGGCCAAAGGAAAATGATCTTGGCTCCATGGTGTGATGAGGAGG
AGGTGGAGAAAGATGTGAAAGCACGTACCAAGGGTGAGATGGGAGCA
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