CX288644

Overview
NameCX288644
Unique NameCX288644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: NEK1_MOUSE (Serine/threonine-protein kinase Nek1 OS=Mus musculus GN=Nek1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 32/102 (31.37%), Postives = 56/102 (54.90%), Query Frame = 3
Query:   18 KSCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKR 323
            ++C GT ++++PE+   +NK Y   +DIW+LGC + E+ T +  +        + KI  GS PP+    S D +  + Q  + NP DRP+   +L+  F+ +
Sbjct:  161 RTCIGTPYYLSPEIC--ENKPYNNKSDIWALGCVLYELCTLKHAFEAGNMKNLVLKIISGSFPPVSPHYSYDLRSLLSQLFKRNPRDRPSVNSILEKGFIAK 260          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: MP2K6_MOUSE (Dual specificity mitogen-activated protein kinase kinase 6 OS=Mus musculus GN=Map2k6 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 3
Query:   42 WMAPEVINNK--NKGYGLPADIWSLGCTVLEMLTSQIPY----APMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPF 314
            +MAPE IN +   KGY + +DIWSLG T++E+   + PY     P + +  +  +   SP    D  S D  DF  QC++ N  +RPT  +L+ HPF
Sbjct:  219 YMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQV--VEEPSPQLPADKFSADFVDFTSQCLKKNSKERPTYPELMQHPF 313          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M2K4_ARATH (Mitogen-activated protein kinase kinase 4 OS=Arabidopsis thaliana GN=MKK4 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 3
Query:   30 GTAFWMAPEVIN---NKNKGYGLPADIWSLGCTVLEMLTSQIPYAPM---ECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASP 356
            GT  +M+PE IN   N+ K  G   DIWSLG ++LE    + P+      +  + +  I    PP  P + S + + FI  C+Q  P  R +A QLL HPF+ R  A+ S + SP
Sbjct:  233 GTIAYMSPERINTDLNQGKYDGYAGDIWSLGVSILEFYLGRFPFPVSRQGDWASLMCAICMSQPPEAPATASPEFRHFISCCLQREPGKRRSAMQLLQHPFILR--ASPSQNRSP 345          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: CLA4_ASHGO (Serine/threonine-protein kinase CLA4 OS=Ashbya gossypii GN=CLA4 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 36/97 (37.11%), Postives = 53/97 (54.64%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPF 314
            GT +WMAPEV+  K + Y    D+WSLG   +EML  + PY   E + AL+ I     P +  P+ LS + + F+  C+ V+   R +  +LL H F
Sbjct:  681 GTPYWMAPEVV--KQREYDEKVDVWSLGIMTIEMLEGEPPYLNEEPLKALYLIATNGTPKLKHPELLSLEIKRFLSVCLCVDVRYRASTEELLHHSF 775          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PLK4_DROVI (Serine/threonine-protein kinase PLK4 OS=Drosophila virilis GN=SAK PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 37/115 (32.17%), Postives = 70/115 (60.87%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKR-----LLATNSGSASPY 359
            GT  +++PEV+++++  +GLPAD+WS+GC +  +L  + P+      + L K+ + S   IP  LS +A+D I + ++ NP++R +  Q+L HPF+ +     +  T +G++  Y
Sbjct:  176 GTPNYISPEVVSHQS--HGLPADLWSVGCMLYTLLVGRPPFDTDAVQSTLNKVVQ-SDYTIPGHLSYEARDLIDKLLRKNPHERISLEQVLRHPFMVKAGGSTISYTTNGASDGY 287          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M3K12_MOUSE (Mitogen-activated protein kinase kinase kinase 12 OS=Mus musculus GN=Map3k12 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 36/97 (37.11%), Postives = 53/97 (54.64%), Query Frame = 3
Query:   21 SCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGS-PPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDH 308
            S  GT  WMAPEVI  +N+      DIWS G  + E+LT +IPY  ++  A ++ +G  S   P+P S     +  ++QC    P +RP+  Q+L H
Sbjct:  302 SFAGTVAWMAPEVI--RNEPVSEKVDIWSFGVVLWELLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSSCPDGFKILLRQCWNSKPRNRPSFRQILLH 396          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M3K12_HUMAN (Mitogen-activated protein kinase kinase kinase 12 OS=Homo sapiens GN=MAP3K12 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 36/97 (37.11%), Postives = 53/97 (54.64%), Query Frame = 3
Query:   21 SCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGS-PPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDH 308
            S  GT  WMAPEVI  +N+      DIWS G  + E+LT +IPY  ++  A ++ +G  S   P+P S     +  ++QC    P +RP+  Q+L H
Sbjct:  269 SFAGTVAWMAPEVI--RNEPVSEKVDIWSFGVVLWELLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSSCPDGFKILLRQCWNSKPRNRPSFRQILLH 363          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M2K1_ORYSJ (Mitogen-activated protein kinase kinase 1 OS=Oryza sativa subsp. japonica GN=MEK1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPME------CMAALFKIGRGSPPPIP-DSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKR 323
            GT  +MAPE I+  +  Y   +DIWSLG  +LE    + PY P E          L  I    PP  P D  S +   FI  C+Q +P +R +A++LL+HPF+K+
Sbjct:  230 GTYNYMAPERISGSS--YDYKSDIWSLGLVILECAIGRFPYIPSEGEGWLSFYELLEAIVDQPPPSAPADQFSPEFCAFISSCIQKDPAERMSASELLNHPFIKK 332          
The following BLAST results are available for this feature:
BLAST of CX288644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
NEK1_MOUSE7.260e-1131.37Serine/threonine-protein kinase Nek1 OS=Mus muscul... [more]
MP2K6_MOUSE7.260e-1138.14Dual specificity mitogen-activated protein kinase ... [more]
M2K4_ARATH7.260e-1136.52Mitogen-activated protein kinase kinase 4 OS=Arabi... [more]
CLA4_ASHGO7.260e-1137.11Serine/threonine-protein kinase CLA4 OS=Ashbya gos... [more]
PLK4_DROVI9.482e-1132.17Serine/threonine-protein kinase PLK4 OS=Drosophila... [more]
M3K12_MOUSE9.482e-1137.11Mitogen-activated protein kinase kinase kinase 12 ... [more]
M3K12_HUMAN9.482e-1137.11Mitogen-activated protein kinase kinase kinase 12 ... [more]
M2K1_ORYSJ9.482e-1138.10Mitogen-activated protein kinase kinase 1 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionC02002G04SK IF1 Citrus clementina cDNA clone C02002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288644 ID=CX288644; Name=CX288644; organism=Citrus clementina; type=EST; length=566bp
AATTCGGCACGAGGGTAAAATCTTGCAGAGGGACTGCATTCTGGATGGCC
CCAGAGGTTATTAATAATAAGAACAAAGGTTATGGGCTTCCAGCTGATAT
ATGGAGCCTTGGCTGCACTGTGTTGGAGATGTTAACCAGTCAAATTCCGT
ATGCTCCTATGGAATGTATGGCGGCATTGTTCAAGATTGGAAGGGGTTCG
CCACCACCTATTCCTGATAGTCTCTCAAAAGATGCTCAGGATTTTATCAA
GCAATGTGTACAAGTTAATCCAAATGATCGTCCCACTGCAGCTCAGCTCT
TAGACCACCCATTTGTTAAGAGACTACTTGCCACAAACTCAGGCTCAGCA
TCTCCTTATCTAGGTAGACGGTGAGGTACATATCAATTGTTAAATTACAT
TTCAGTACTTTTCCTGTTGCTGTGCTCTCCTTAACACTGGAAAGAAGAGC
TAAAACTGTGGGCGTGAATGCTTCTATTTAATACAATTAGCCTCTCTGTG
CTCCATCAGTCTCCACAGTGAGTCACACGAATTCTTCTACCATGCTTTAA
TTTTATGTTCAATGCA
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