CX288644

Overview
NameCX288644
Unique NameCX288644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: SVKA_DICDI (Serine/threonine-protein kinase svkA OS=Dictyostelium discoideum GN=svkA PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.247e-19
Identity = 49/104 (47.12%), Postives = 61/104 (58.65%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNS 341
            GT FWMAPEVI  K  GY   ADIWS+G T LEM   + P A +  M ALF I +  PP +  + SK  ++F   C+  +PN RPTA  LL H F+K    T+S
Sbjct:  169 GTPFWMAPEVI--KQTGYDSKADIWSMGITALEMAKGEPPRADLHPMRALFLIPKDPPPTLEGNFSKGFKEFCALCLNKDPNQRPTAKDLLKHKFIKAAKKTSS 270          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK4_PAPAN (Serine/threonine-protein kinase 4 OS=Papio anubis GN=STK4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.247e-19
Identity = 50/99 (50.51%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PYA +  M A+F I    PP    P+  S +  DF+KQC+  +P  R TA QLL HPFVK
Sbjct:  186 GTPFWMAPEVI--QEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVK 282          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK4_MACMU (Serine/threonine-protein kinase 4 OS=Macaca mulatta GN=STK4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.247e-19
Identity = 50/99 (50.51%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PYA +  M A+F I    PP    P+  S +  DF+KQC+  +P  R TA QLL HPFVK
Sbjct:  186 GTPFWMAPEVI--QEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVK 282          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK4_COLGU (Serine/threonine-protein kinase 4 OS=Colobus guereza GN=STK4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.247e-19
Identity = 50/99 (50.51%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PYA +  M A+F I    PP    P+  S +  DF+KQC+  +P  R TA QLL HPFVK
Sbjct:  186 GTPFWMAPEVI--QEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVK 282          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK4_CERAE (Serine/threonine-protein kinase 4 OS=Cercopithecus aethiops GN=STK4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.247e-19
Identity = 50/99 (50.51%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PYA +  M A+F I    PP    P+  S +  DF+KQC+  +P  R TA QLL HPFVK
Sbjct:  186 GTPFWMAPEVI--QEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVK 282          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK4_BOVIN (Serine/threonine-protein kinase 4 OS=Bos taurus GN=STK4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.247e-19
Identity = 50/99 (50.51%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PYA +  M A+F I    PP    P+  S    DF+KQC+  +P  R TA QLL HPFVK
Sbjct:  186 GTPFWMAPEVI--QEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDSFMDFVKQCLVKSPEQRATATQLLQHPFVK 282          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK4_AOTNA (Serine/threonine-protein kinase 4 OS=Aotus nancymaae GN=STK4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.247e-19
Identity = 50/99 (50.51%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PYA +  M A+F I    PP    P+  S +  DF+KQC+  +P  R TA QLL HPFVK
Sbjct:  186 GTPFWMAPEVI--QEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVK 282          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M3K2_MOUSE (Mitogen-activated protein kinase kinase kinase 2 OS=Mus musculus GN=Map3k2 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.247e-19
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 3
Query:    6 GTRVKSCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIG-RGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            GT +KS  GT +WM+PEVI+ +  GYG  ADIWS+ CTV+EMLT + P+A  E MAA+FKI  + + P +P  +S   +DF+K+ + V    RP+A +LL H FV
Sbjct:  515 GTGMKSVTGTPYWMSPEVISGE--GYGRKADIWSVACTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPKLPPHVSDYTRDFLKR-IFVEAKLRPSAEELLRHMFV 616          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK4_LEMCA (Serine/threonine-protein kinase 4 OS=Lemur catta GN=STK4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.546e-19
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PYA +  M A+F I    PP    P+  S +  DF++QC+  +P+ R TA QLL HPFVK
Sbjct:  186 GTPFWMAPEVI--QEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFMDFVRQCLVKSPDQRATATQLLQHPFVK 282          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK3_DANRE (Serine/threonine-protein kinase 3 OS=Danio rerio GN=stk3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.546e-19
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PYA +  M A+F I    PP    P+  S D  DF+K+C+  NP  R TA QLL HPF+
Sbjct:  182 GTPFWMAPEVI--QEIGYNCVADIWSLGITSIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPEHWSDDFTDFVKKCLVKNPEQRATATQLLQHPFI 277          
The following BLAST results are available for this feature:
BLAST of CX288644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
SVKA_DICDI4.247e-1947.12Serine/threonine-protein kinase svkA OS=Dictyostel... [more]
STK4_PAPAN4.247e-1950.51Serine/threonine-protein kinase 4 OS=Papio anubis ... [more]
STK4_MACMU4.247e-1950.51Serine/threonine-protein kinase 4 OS=Macaca mulatt... [more]
STK4_COLGU4.247e-1950.51Serine/threonine-protein kinase 4 OS=Colobus guere... [more]
STK4_CERAE4.247e-1950.51Serine/threonine-protein kinase 4 OS=Cercopithecus... [more]
STK4_BOVIN4.247e-1950.51Serine/threonine-protein kinase 4 OS=Bos taurus GN... [more]
STK4_AOTNA4.247e-1950.51Serine/threonine-protein kinase 4 OS=Aotus nancyma... [more]
M3K2_MOUSE4.247e-1948.57Mitogen-activated protein kinase kinase kinase 2 O... [more]
STK4_LEMCA5.546e-1949.49Serine/threonine-protein kinase 4 OS=Lemur catta G... [more]
STK3_DANRE5.546e-1950.00Serine/threonine-protein kinase 3 OS=Danio rerio G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02002G04SK IF1 Citrus clementina cDNA clone C02002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288644 ID=CX288644; Name=CX288644; organism=Citrus clementina; type=EST; length=566bp
AATTCGGCACGAGGGTAAAATCTTGCAGAGGGACTGCATTCTGGATGGCC
CCAGAGGTTATTAATAATAAGAACAAAGGTTATGGGCTTCCAGCTGATAT
ATGGAGCCTTGGCTGCACTGTGTTGGAGATGTTAACCAGTCAAATTCCGT
ATGCTCCTATGGAATGTATGGCGGCATTGTTCAAGATTGGAAGGGGTTCG
CCACCACCTATTCCTGATAGTCTCTCAAAAGATGCTCAGGATTTTATCAA
GCAATGTGTACAAGTTAATCCAAATGATCGTCCCACTGCAGCTCAGCTCT
TAGACCACCCATTTGTTAAGAGACTACTTGCCACAAACTCAGGCTCAGCA
TCTCCTTATCTAGGTAGACGGTGAGGTACATATCAATTGTTAAATTACAT
TTCAGTACTTTTCCTGTTGCTGTGCTCTCCTTAACACTGGAAAGAAGAGC
TAAAACTGTGGGCGTGAATGCTTCTATTTAATACAATTAGCCTCTCTGTG
CTCCATCAGTCTCCACAGTGAGTCACACGAATTCTTCTACCATGCTTTAA
TTTTATGTTCAATGCA
back to top