CX288644

Overview
NameCX288644
Unique NameCX288644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M3K2_HUMAN (Mitogen-activated protein kinase kinase kinase 2 OS=Homo sapiens GN=MAP3K2 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.546e-19
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 3
Query:    6 GTRVKSCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIG-RGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            GT +KS  GT +WM+PEVI+ +  GYG  ADIWS+ CTV+EMLT + P+A  E MAA+FKI  + + P +P  +S   +DF+K+ + V    RP+A +LL H FV
Sbjct:  515 GTGMKSVTGTPYWMSPEVISGE--GYGRKADIWSVACTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPKLPPHVSDYTRDFLKR-IFVEAKLRPSADELLRHMFV 616          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M3K15_HUMAN (Mitogen-activated protein kinase kinase kinase 15 OS=Homo sapiens GN=MAP3K15 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.546e-19
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPM-ECMAALFKIGRGS-PPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRL 326
            GT  +MAPE+I+   +GYG PADIWSLGCT++EM TS+ P+  + E  AA+FK+G     P IP++LS +A+ FI  C + +P+ R T A+LL   F++++
Sbjct:  811 GTLQYMAPEIIDQGPRGYGAPADIWSLGCTIIEMATSKPPFHELGEPQAAMFKVGMFKIHPEIPEALSAEARAFILSCFEPDPHKRATTAELLREGFLRQV 911          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK4_OTOGA (Serine/threonine-protein kinase 4 OS=Otolemur garnettii GN=STK4 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.244e-19
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PYA +  M A+F I    PP    P+  S +  DF++QC+  +P+ R TA QLL HPFVK
Sbjct:  186 GTPFWMAPEVI--QEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVRQCLVKSPDQRATATQLLQHPFVK 282          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK3_RAT (Serine/threonine-protein kinase 3 OS=Rattus norvegicus GN=Stk3 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.244e-19
Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PYA +  M A+F I    PP    P+  S D  DF+K+C+  +P  R TA QLL HPF+K
Sbjct:  183 GTPFWMAPEVI--QEIGYNCVADIWSLGITSIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKSPEQRATATQLLQHPFIK 279          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK3_MOUSE (Serine/threonine-protein kinase 3 OS=Mus musculus GN=Stk3 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.244e-19
Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PYA +  M A+F I    PP    P+  S D  DF+K+C+  +P  R TA QLL HPF+K
Sbjct:  183 GTPFWMAPEVI--QEIGYNCVADIWSLGITSIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKSPEQRATATQLLQHPFIK 279          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK4_HUMAN (Serine/threonine-protein kinase 4 OS=Homo sapiens GN=STK4 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 9.460e-19
Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PYA +  M A+F I    PP    P+  S +  DF+KQC+  +P  R TA QLL HPFV+
Sbjct:  186 GTPFWMAPEVI--QEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVR 282          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK3_XENLA (Serine/threonine-protein kinase 3 OS=Xenopus laevis GN=stk3 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.236e-18
Identity = 48/99 (48.48%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PYA +  M A+F I    PP    P+  + +  DF+K+C+  NP  R TA QLL HPF+K
Sbjct:  182 GTPFWMAPEVI--QEIGYNCVADIWSLGITSIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWTDEFTDFVKKCLVKNPEQRATATQLLQHPFIK 278          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK4_SQUAC (Serine/threonine-protein kinase 3/4 OS=Squalus acanthias GN=STK4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.753e-18
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG + +EM   + PYA +  M A+F I    PP    P+  + +  DF+KQC+  NP  R  A QLL HPF+K
Sbjct:  188 GTPFWMAPEVI--QEIGYNCVADIWSLGISAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWTDEFTDFVKQCLVKNPEQRAAATQLLQHPFIK 284          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK4_XENTR (Serine/threonine-protein kinase 4 OS=Xenopus tropicalis GN=stk4 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.595e-18
Identity = 49/99 (49.49%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PYA +  M A+F I    PP    P+  SKD  DFI  C+  NP  R +A +LL HPF+K
Sbjct:  186 GTPFWMAPEVI--QEIGYNCVADIWSLGITAIEMAEGKPPYAEIHPMRAIFMIPSNPPPTFRKPELWSKDFVDFINLCLVKNPELRSSATELLQHPFIK 282          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK4_XENLA (Serine/threonine-protein kinase 4 OS=Xenopus laevis GN=stk4 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.595e-18
Identity = 49/99 (49.49%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PYA +  M A+F I    PP    P+  SKD  DFI  C+  NP  R +A +LL HPF+K
Sbjct:  186 GTPFWMAPEVI--QEIGYNCVADIWSLGITAIEMAEGKPPYAEIHPMRAIFMIPSNPPPTFRKPELWSKDFVDFINLCLVKNPELRSSATELLQHPFIK 282          
The following BLAST results are available for this feature:
BLAST of CX288644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
M3K2_HUMAN5.546e-1948.57Mitogen-activated protein kinase kinase kinase 2 O... [more]
M3K15_HUMAN5.546e-1946.53Mitogen-activated protein kinase kinase kinase 15 ... [more]
STK4_OTOGA7.244e-1949.49Serine/threonine-protein kinase 4 OS=Otolemur garn... [more]
STK3_RAT7.244e-1949.49Serine/threonine-protein kinase 3 OS=Rattus norveg... [more]
STK3_MOUSE7.244e-1949.49Serine/threonine-protein kinase 3 OS=Mus musculus ... [more]
STK4_HUMAN9.460e-1949.49Serine/threonine-protein kinase 4 OS=Homo sapiens ... [more]
STK3_XENLA1.236e-1848.48Serine/threonine-protein kinase 3 OS=Xenopus laevi... [more]
STK4_SQUAC2.753e-1847.47Serine/threonine-protein kinase 3/4 OS=Squalus aca... [more]
STK4_XENTR3.595e-1849.49Serine/threonine-protein kinase 4 OS=Xenopus tropi... [more]
STK4_XENLA3.595e-1849.49Serine/threonine-protein kinase 4 OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionC02002G04SK IF1 Citrus clementina cDNA clone C02002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288644 ID=CX288644; Name=CX288644; organism=Citrus clementina; type=EST; length=566bp
AATTCGGCACGAGGGTAAAATCTTGCAGAGGGACTGCATTCTGGATGGCC
CCAGAGGTTATTAATAATAAGAACAAAGGTTATGGGCTTCCAGCTGATAT
ATGGAGCCTTGGCTGCACTGTGTTGGAGATGTTAACCAGTCAAATTCCGT
ATGCTCCTATGGAATGTATGGCGGCATTGTTCAAGATTGGAAGGGGTTCG
CCACCACCTATTCCTGATAGTCTCTCAAAAGATGCTCAGGATTTTATCAA
GCAATGTGTACAAGTTAATCCAAATGATCGTCCCACTGCAGCTCAGCTCT
TAGACCACCCATTTGTTAAGAGACTACTTGCCACAAACTCAGGCTCAGCA
TCTCCTTATCTAGGTAGACGGTGAGGTACATATCAATTGTTAAATTACAT
TTCAGTACTTTTCCTGTTGCTGTGCTCTCCTTAACACTGGAAAGAAGAGC
TAAAACTGTGGGCGTGAATGCTTCTATTTAATACAATTAGCCTCTCTGTG
CTCCATCAGTCTCCACAGTGAGTCACACGAATTCTTCTACCATGCTTTAA
TTTTATGTTCAATGCA
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