CX288644

Overview
NameCX288644
Unique NameCX288644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK25_BOVIN (Serine/threonine-protein kinase 25 OS=Bos taurus GN=STK25 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.191e-17
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKR 323
            GT FWMAPEVI  K   Y   ADIWSLG T +E+   + P + +  M  LF I + SPP +    SK  ++F++ C+  +P  RPTA +LL H F+ R
Sbjct:  177 GTPFWMAPEVI--KQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSPPTLEGHHSKPFKEFVEACLNKDPRFRPTAKELLKHKFITR 272          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PPK11_SCHPO (Serine/threonine-protein kinase ppk11 OS=Schizosaccharomyces pombe GN=ppk11 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.780e-17
Identity = 46/105 (43.81%), Postives = 59/105 (56.19%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDS-LSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNS 341
            GT FWMAPEV+  K  GY   ADIWSLG T  E+ T + PY+ +  M  L  I + SPP +  S  S+   DF+  C++ NP DR TA  L  H F+K+     S
Sbjct:  164 GTPFWMAPEVV--KQTGYNYKADIWSLGITAYELATGEPPYSGIHPMKVLLLIPKHSPPSLERSKFSRAFCDFVSNCLKKNPKDRATAEYLSKHKFIKKYCPNTS 266          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK25_MOUSE (Serine/threonine-protein kinase 25 OS=Mus musculus GN=Stk25 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.156e-16
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKR 323
            GT FWMAPEVI  K   Y   ADIWSLG T +E+   + P + +  M  LF I + +PP +    SK  ++F++ C+  +P  RPTA +LL H F+ R
Sbjct:  177 GTPFWMAPEVI--KQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNNPPTLEGHHSKPFKEFVEACLNKDPRFRPTAKELLKHKFITR 272          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STE20_CANGA (Serine/threonine-protein kinase STE20 OS=Candida glabrata GN=STE20 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.156e-16
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASP 356
            GT +WMAPEV++ K   YG   DIWSLG  ++EM+  + PY     + AL+ I     P +  P++LS     F+  C++V+P++R TA +LLD PF+  +   NS S SP
Sbjct:  776 GTPYWMAPEVVSRKE--YGPKVDIWSLGIMIIEMIEGEPPYLNETPLRALYLIATNGTPKLKEPEALSDTLTKFLDWCLKVDPSERATATELLDDPFITEIAEDNS-SLSP 883          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: SLK_RAT (STE20-like serine/threonine-protein kinase OS=Rattus norvegicus GN=Slk PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.156e-16
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 3
Query:    3 FGTRVKSCR---------GTAFWMAPEVI---NNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            FG   K+ R         GT +WMAPEV+    +K++ Y   AD+WSLG T++EM   + P+  +  M  L KI +  PP +  P   S + +DF+K+C++ N + R T +QLL HPFV
Sbjct:  174 FGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFV 292          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: SLK_HUMAN (STE20-like serine/threonine-protein kinase OS=Homo sapiens GN=SLK PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.156e-16
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 3
Query:    3 FGTRVKSCR---------GTAFWMAPEVI---NNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            FG   K+ R         GT +WMAPEV+    +K++ Y   AD+WSLG T++EM   + P+  +  M  L KI +  PP +  P   S + +DF+K+C++ N + R T +QLL HPFV
Sbjct:  174 FGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFV 292          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: SLK_CAVPO (STE20-like serine/threonine-protein kinase OS=Cavia porcellus GN=SLK PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.156e-16
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 3
Query:    3 FGTRVKSCR---------GTAFWMAPEVI---NNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            FG   K+ R         GT +WMAPEV+    +K++ Y   AD+WSLG T++EM   + P+  +  M  L KI +  PP +  P   S + +DF+K+C++ N + R T +QLL HPFV
Sbjct:  174 FGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFV 292          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M3K5_MOUSE (Mitogen-activated protein kinase kinase kinase 5 OS=Mus musculus GN=Map3k5 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.510e-16
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPM-ECMAALFKIGRGS-PPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT  +MAPE+I+   +GYG  ADIWSLGCT++EM T + P+  + E  AA+FK+G     P IP+S+S +A+ FI +C + +P+ R  A  LL   F+K
Sbjct:  848 GTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLIDEFLK 946          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M3K5_HUMAN (Mitogen-activated protein kinase kinase kinase 5 OS=Homo sapiens GN=MAP3K5 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.510e-16
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPM-ECMAALFKIGRGS-PPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT  +MAPE+I+   +GYG  ADIWSLGCT++EM T + P+  + E  AA+FK+G     P IP+S+S +A+ FI +C + +P+ R  A  LL   F+K
Sbjct:  841 GTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLK 939          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: CDC7_SCHPO (Cell division control protein 7 OS=Schizosaccharomyces pombe GN=cdc7 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.510e-16
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            G+ +WMAPEVI  +  G    +DIWS+GCTV+E+L    PY  ++  +ALF++ +   PP+P ++S  A+ F+ QC Q +PN R    +LL HP+V
Sbjct:  166 GSPYWMAPEVI--ELVGATTASDIWSVGCTVIELLDGNPPYYDLDPTSALFRMVKDEHPPLPSNISSAAKSFLMQCFQKDPNLRIKTRKLLKHPWV 259          
The following BLAST results are available for this feature:
BLAST of CX288644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
STK25_BOVIN5.191e-1743.88Serine/threonine-protein kinase 25 OS=Bos taurus G... [more]
PPK11_SCHPO6.780e-1743.81Serine/threonine-protein kinase ppk11 OS=Schizosac... [more]
STK25_MOUSE1.156e-1642.86Serine/threonine-protein kinase 25 OS=Mus musculus... [more]
STE20_CANGA1.156e-1640.54Serine/threonine-protein kinase STE20 OS=Candida g... [more]
SLK_RAT1.156e-1638.66STE20-like serine/threonine-protein kinase OS=Ratt... [more]
SLK_HUMAN1.156e-1638.66STE20-like serine/threonine-protein kinase OS=Homo... [more]
SLK_CAVPO1.156e-1638.66STE20-like serine/threonine-protein kinase OS=Cavi... [more]
M3K5_MOUSE1.510e-1645.45Mitogen-activated protein kinase kinase kinase 5 O... [more]
M3K5_HUMAN1.510e-1645.45Mitogen-activated protein kinase kinase kinase 5 O... [more]
CDC7_SCHPO1.510e-1642.71Cell division control protein 7 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionC02002G04SK IF1 Citrus clementina cDNA clone C02002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288644 ID=CX288644; Name=CX288644; organism=Citrus clementina; type=EST; length=566bp
AATTCGGCACGAGGGTAAAATCTTGCAGAGGGACTGCATTCTGGATGGCC
CCAGAGGTTATTAATAATAAGAACAAAGGTTATGGGCTTCCAGCTGATAT
ATGGAGCCTTGGCTGCACTGTGTTGGAGATGTTAACCAGTCAAATTCCGT
ATGCTCCTATGGAATGTATGGCGGCATTGTTCAAGATTGGAAGGGGTTCG
CCACCACCTATTCCTGATAGTCTCTCAAAAGATGCTCAGGATTTTATCAA
GCAATGTGTACAAGTTAATCCAAATGATCGTCCCACTGCAGCTCAGCTCT
TAGACCACCCATTTGTTAAGAGACTACTTGCCACAAACTCAGGCTCAGCA
TCTCCTTATCTAGGTAGACGGTGAGGTACATATCAATTGTTAAATTACAT
TTCAGTACTTTTCCTGTTGCTGTGCTCTCCTTAACACTGGAAAGAAGAGC
TAAAACTGTGGGCGTGAATGCTTCTATTTAATACAATTAGCCTCTCTGTG
CTCCATCAGTCTCCACAGTGAGTCACACGAATTCTTCTACCATGCTTTAA
TTTTATGTTCAATGCA
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