CX288644

Overview
NameCX288644
Unique NameCX288644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: SLK_MOUSE (STE20-like serine/threonine-protein kinase OS=Mus musculus GN=Slk PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.973e-16
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 3
Query:    3 FGTRVKSCR---------GTAFWMAPEVI---NNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            FG   K+ R         GT +WMAPEV+    +K++ Y   AD+WSLG T++EM   + P+  +  M  L KI +  PP +  P   S + +DF+++C++ N + R T +QLL HPFV
Sbjct:  174 FGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSKWSSNFKDFLRKCLEKNVDARWTTSQLLQHPFV 292          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: CST1_CAEEL (Serine/threonine-protein kinase cst-1 OS=Caenorhabditis elegans GN=cst-1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.576e-16
Identity = 44/99 (44.44%), Postives = 58/99 (58.59%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI  +  GY   ADIWSLG T +EM   + PY+ +  M A+F I    PP    P+  S +  DFI+ C+   P +R TA +L +H F+K
Sbjct:  191 GTPFWMAPEVI--EEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCEHTFIK 287          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M3K6_MOUSE (Mitogen-activated protein kinase kinase kinase 6 OS=Mus musculus GN=Map3k6 PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 3.365e-16
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPM-ECMAALFKIGRGS-PPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT  +MAPE+I+   +GYG  ADIWSLGCTV+EM T + P+  +    AA+F++G     PP+P SLS +AQ F+ +  + +P  R +A +LL  PF++
Sbjct:  810 GTLQYMAPEIIDQGPRGYGKAADIWSLGCTVIEMATGRPPFHELGSPQAAMFQVGMYKVHPPVPGSLSAEAQAFLLRTFEPDPRLRASAQELLGDPFLQ 908          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: MST4_HUMAN (Serine/threonine-protein kinase MST4 OS=Homo sapiens GN=MST4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.739e-16
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            GT FWMAPEVI  +   Y   ADIWSLG T +E+   + P + M  M  LF I + +PP +    +K  ++FI  C+  +P+ RPTA +LL H F+
Sbjct:  181 GTPFWMAPEVI--QQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNPPTLVGDFTKSFKEFIDACLNKDPSFRPTAKELLKHKFI 274          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STE20_SCHPO (Serine/threonine-protein kinase shk1/pak1 OS=Schizosaccharomyces pombe GN=shk1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.496e-16
Identity = 42/106 (39.62%), Postives = 61/106 (57.55%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNS 341
            GT +WMAPEV+  K   YG   D+WSLG   +EM+  + PY     + AL+ I     P I  P+ LS    DF+ + + VNP  RP++ +LL HPF+K+ +  +S
Sbjct:  542 GTPYWMAPEVVTRKE--YGFKVDVWSLGIMAIEMVEGEPPYLNENPLRALYLIATIGTPKISRPELLSSVFHDFLSKSLTVNPKQRPSSGELLRHPFLKQAVPVSS 645          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAKG_DICDI (Serine/threonine-protein kinase pakG OS=Dictyostelium discoideum GN=pakG PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.496e-16
Identity = 46/113 (40.71%), Postives = 60/113 (53.10%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASPYL 362
            GT  WMAPE+I  +N  Y    DIWSLG T +EM  S  P   M    A+  I    PP +  P   SK+  DFI QC Q +P  RP+A +LL HPF+ + ++T      P +
Sbjct:  295 GTPLWMAPEIIKRQN--YNNKCDIWSLGITAIEMAESFPPLYTMPPTRAMLMIPNKPPPTLSKPHHFSKELNDFIGQCCQKDPEKRPSAIELLTHPFLVQNISTPQEVLKPLI 405          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: MST4_MOUSE (Serine/threonine-protein kinase MST4 OS=Mus musculus GN=Mst4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.496e-16
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            GT FWMAPEVI  +   Y   ADIWSLG T +E+   + P + M  M  LF I + +PP +    +K  ++FI  C+  +P+ RPTA +LL H F+
Sbjct:  181 GTPFWMAPEVI--QQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNPPTLIGDFTKSFKEFIDACLNKDPSFRPTAKELLKHKFI 274          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STE20_KLULA (Serine/threonine-protein kinase STE20 OS=Kluyveromyces lactis GN=STE20 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.790e-16
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSA 350
            GT +WMAPEV++ K   YG   DIWSLG  ++EM+  + PY     + AL+ I     P +  P +LS     F+  C+ V+P DR TAA LL+ PF+  +   N+  A
Sbjct:  854 GTPYWMAPEVVSRKE--YGPKVDIWSLGIMIIEMIEGEPPYLNETPLRALYLIATNGTPKLKDPGNLSHKMAMFLNWCLMVDPEDRGTAADLLEDPFITEIAEENTSLA 960          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STE11_YEAST (Serine/threonine-protein kinase STE11 OS=Saccharomyces cerevisiae GN=STE11 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 9.790e-16
Identity = 38/99 (38.38%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   21 SCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            S +G+ FWM+PEV+  K       ADIWS GC V+EM T + P+     M A+FKIG  + P IP   + + ++F+++  +++   RP+A +LL HP++
Sbjct:  616 SLQGSVFWMSPEVV--KQTATTAKADIWSTGCVVIEMFTGKHPFPDFSQMQAIFKIGTNTTPEIPSWATSEGKNFLRKAFELDYQYRPSALELLQHPWL 712          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STE11_YEAS7 (Serine/threonine-protein kinase STE11 OS=Saccharomyces cerevisiae (strain YJM789) GN=STE11 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.790e-16
Identity = 38/99 (38.38%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   21 SCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            S +G+ FWM+PEV+  K       ADIWS GC V+EM T + P+     M A+FKIG  + P IP   + + ++F+++  +++   RP+A +LL HP++
Sbjct:  616 SLQGSVFWMSPEVV--KQTATTAKADIWSTGCVVIEMFTGKHPFPDFSQMQAIFKIGTNTTPEIPSWATSEGKNFLRKAFELDYQYRPSALELLQHPWL 712          
The following BLAST results are available for this feature:
BLAST of CX288644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
SLK_MOUSE1.973e-1637.82STE20-like serine/threonine-protein kinase OS=Mus ... [more]
CST1_CAEEL2.576e-1644.44Serine/threonine-protein kinase cst-1 OS=Caenorhab... [more]
M3K6_MOUSE3.365e-1644.44Mitogen-activated protein kinase kinase kinase 6 O... [more]
MST4_HUMAN5.739e-1642.71Serine/threonine-protein kinase MST4 OS=Homo sapie... [more]
STE20_SCHPO7.496e-1639.62Serine/threonine-protein kinase shk1/pak1 OS=Schiz... [more]
PAKG_DICDI7.496e-1640.71Serine/threonine-protein kinase pakG OS=Dictyostel... [more]
MST4_MOUSE7.496e-1642.71Serine/threonine-protein kinase MST4 OS=Mus muscul... [more]
STE20_KLULA9.790e-1639.45Serine/threonine-protein kinase STE20 OS=Kluyverom... [more]
STE11_YEAST9.790e-1638.38Serine/threonine-protein kinase STE11 OS=Saccharom... [more]
STE11_YEAS79.790e-1638.38Serine/threonine-protein kinase STE11 OS=Saccharom... [more]

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Properties
Property NameValue
Genbank descriptionC02002G04SK IF1 Citrus clementina cDNA clone C02002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288644 ID=CX288644; Name=CX288644; organism=Citrus clementina; type=EST; length=566bp
AATTCGGCACGAGGGTAAAATCTTGCAGAGGGACTGCATTCTGGATGGCC
CCAGAGGTTATTAATAATAAGAACAAAGGTTATGGGCTTCCAGCTGATAT
ATGGAGCCTTGGCTGCACTGTGTTGGAGATGTTAACCAGTCAAATTCCGT
ATGCTCCTATGGAATGTATGGCGGCATTGTTCAAGATTGGAAGGGGTTCG
CCACCACCTATTCCTGATAGTCTCTCAAAAGATGCTCAGGATTTTATCAA
GCAATGTGTACAAGTTAATCCAAATGATCGTCCCACTGCAGCTCAGCTCT
TAGACCACCCATTTGTTAAGAGACTACTTGCCACAAACTCAGGCTCAGCA
TCTCCTTATCTAGGTAGACGGTGAGGTACATATCAATTGTTAAATTACAT
TTCAGTACTTTTCCTGTTGCTGTGCTCTCCTTAACACTGGAAAGAAGAGC
TAAAACTGTGGGCGTGAATGCTTCTATTTAATACAATTAGCCTCTCTGTG
CTCCATCAGTCTCCACAGTGAGTCACACGAATTCTTCTACCATGCTTTAA
TTTTATGTTCAATGCA
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