CX288644

Overview
NameCX288644
Unique NameCX288644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STK4_DICDI (Serine/threonine-protein kinase 4 homolog A OS=Dictyostelium discoideum GN=krsA PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.411e-14
Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPP----IPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKR 323
            GT FWMAPEVI  +  GY   ADIWS G T +EM  S+ P   +  M  +F I   S PP     P+  S +  DF+ +C+   P  RP+A +LL HPF+ +
Sbjct:  176 GTPFWMAPEVI--QEIGYDYKADIWSYGITCIEMAESKPPLFNVHPMRVIFMIPNPSRPPPKLTEPEKWSPEFNDFLAKCLTRKPELRPSAEELLKHPFITK 275          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: NEK5_MOUSE (Serine/threonine-protein kinase Nek5 OS=Mus musculus GN=Nek5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.411e-14
Identity = 38/105 (36.19%), Postives = 60/105 (57.14%), Query Frame = 3
Query:   18 KSCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLA 332
            ++C GT ++++PE+   +N+ Y    DIWSLGC + E+ T + P+        + KI +G   PI    S+D Q  I Q  +V+P DRP+   LL  PF++ L+A
Sbjct:  158 QTCAGTPYYLSPEIC--QNRPYNNKTDIWSLGCVLYELCTLKHPFESNNFHHLVLKICQGRVAPISPHFSRDLQSLIPQLFRVSPQDRPSVTSLLKRPFLETLIA 260          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: TNIK_MOUSE (Traf2 and NCK-interacting protein kinase OS=Mus musculus GN=Tnik PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.149e-14
Identity = 42/101 (41.58%), Postives = 54/101 (53.47%), Query Frame = 3
Query:   30 GTAFWMAPEVI---NNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPD-SLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT +WMAPEVI    N +  Y   +D+WSLG T +EM     P   M  M ALF I R   P +     SK  Q FI+ C+  N + RP   QL+ HPF++
Sbjct:  190 GTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPATEQLMKHPFIR 290          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: TNIK_HUMAN (TRAF2 and NCK-interacting protein kinase OS=Homo sapiens GN=TNIK PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.149e-14
Identity = 42/101 (41.58%), Postives = 54/101 (53.47%), Query Frame = 3
Query:   30 GTAFWMAPEVI---NNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPD-SLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT +WMAPEVI    N +  Y   +D+WSLG T +EM     P   M  M ALF I R   P +     SK  Q FI+ C+  N + RP   QL+ HPF++
Sbjct:  190 GTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPATEQLMKHPFIR 290          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAKH_DICDI (Serine/threonine-protein kinase pakH OS=Dictyostelium discoideum GN=pakH-1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.149e-14
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   21 SCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            S  GT +WMAPE++N  +  Y    D+WSLG   +E+   + P + +  M A++ IGR  PP    P   S +   F+ +C+  + N+R + +QLLDHPF+K
Sbjct:  196 SIAGTPYWMAPEILNQTD--YNNKIDVWSLGIVAIELADGEPPLSEVNPMRAMYMIGRRPPPTFKDPKKWSPEFVSFVDKCLTKDINERWSPSQLLDHPFIK 295          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: MYO3A_MOUSE (Myosin-IIIa OS=Mus musculus GN=Myo3a PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.113e-14
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = 3
Query:   12 RVKSCRGTAFWMAPEVI---NNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRL 326
            R+ +  GT FWMAPEVI      +  Y    D WSLG T +E+     P A +  M ALFKI R  PP +  P+  S +  DFI +C+  +   RPT + LL H F+ ++
Sbjct:  181 RLNTSVGTPFWMAPEVIACEQQLDTTYDARCDTWSLGITAIELGDGDPPLAELHPMRALFKIPRNPPPKLRQPELWSAEFNDFISKCLTKDYEKRPTVSDLLKHKFITQI 290          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: MYO3A_HUMAN (Myosin-IIIa OS=Homo sapiens GN=MYO3A PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.113e-14
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = 3
Query:   30 GTAFWMAPEVI---NNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRL 326
            GT FWMAPEVI      +  Y    D WSLG T +E+     P A +  M ALFKI R  PP +  P+  S +  DFI +C+  +   RPT ++LL H F+ ++
Sbjct:  187 GTPFWMAPEVIACEQQLDTTYDARCDTWSLGITAIELGDGDPPLADLHPMRALFKIPRNPPPKLRQPELWSAEFNDFISKCLTKDYEKRPTVSELLQHKFITQI 290          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STE20_USTMA (Serine/threonine-protein kinase SMU1 OS=Ustilago maydis GN=SMU1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKR 323
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P I  P++LS   +DF+   + V+   RP A  +L HPF+KR
Sbjct:  628 GTPYWMAPEVVTRKE--YGPKVDIWSLGIMCIEMVEGEPPYLNENPLRALYLIATNGTPKINNPENLSNTFKDFLTTSLDVDAERRPDALGMLAHPFLKR 725          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STE20_DEBHA (Serine/threonine-protein kinase STE20 OS=Debaryomyces hansenii GN=STE20 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASP 356
            GT +WMAPEV++ K   YG   D+WSLG  ++EM+  + PY     + AL+ I     P +  P++LS D + F+  C+QV+ N R  A QLL+  F+  L A +  S SP
Sbjct:  958 GTPYWMAPEVVSRKE--YGPKVDVWSLGIMIIEMIEGEPPYLNETPLRALYLIATNGTPKLKEPEALSYDIRKFLSWCLQVDFNKRGNADQLLNDKFI--LEADDVESLSP 1064          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: DST1_DICDI (Serine/threonine-protein kinase dst1 OS=Dictyostelium discoideum GN=dst1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSL--SKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT +WMAPEVI  +NK Y   AD+WSLG T +EM     P + +  M  +F I R   P + D    S   QDFI +C+  +P +RPTA +LL+H F++
Sbjct:  186 GTPYWMAPEVIQ-ENK-YDGKADVWSLGITAIEMAEGLPPNSNVHPMRVIFMIPREESPALTDKSIWSDKFQDFISKCLTKDPAERPTAKELLNHEFIQ 282          
The following BLAST results are available for this feature:
BLAST of CX288644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
STK4_DICDI2.411e-1442.16Serine/threonine-protein kinase 4 homolog A OS=Dic... [more]
NEK5_MOUSE2.411e-1436.19Serine/threonine-protein kinase Nek5 OS=Mus muscul... [more]
TNIK_MOUSE3.149e-1441.58Traf2 and NCK-interacting protein kinase OS=Mus mu... [more]
TNIK_HUMAN3.149e-1441.58TRAF2 and NCK-interacting protein kinase OS=Homo s... [more]
PAKH_DICDI3.149e-1437.25Serine/threonine-protein kinase pakH OS=Dictyostel... [more]
MYO3A_MOUSE4.113e-1439.09Myosin-IIIa OS=Mus musculus GN=Myo3a PE=2 SV=1[more]
MYO3A_HUMAN4.113e-1440.38Myosin-IIIa OS=Homo sapiens GN=MYO3A PE=1 SV=2[more]
STE20_USTMA5.372e-1441.00Serine/threonine-protein kinase SMU1 OS=Ustilago m... [more]
STE20_DEBHA5.372e-1439.64Serine/threonine-protein kinase STE20 OS=Debaryomy... [more]
DST1_DICDI5.372e-1443.43Serine/threonine-protein kinase dst1 OS=Dictyostel... [more]

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Properties
Property NameValue
Genbank descriptionC02002G04SK IF1 Citrus clementina cDNA clone C02002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288644 ID=CX288644; Name=CX288644; organism=Citrus clementina; type=EST; length=566bp
AATTCGGCACGAGGGTAAAATCTTGCAGAGGGACTGCATTCTGGATGGCC
CCAGAGGTTATTAATAATAAGAACAAAGGTTATGGGCTTCCAGCTGATAT
ATGGAGCCTTGGCTGCACTGTGTTGGAGATGTTAACCAGTCAAATTCCGT
ATGCTCCTATGGAATGTATGGCGGCATTGTTCAAGATTGGAAGGGGTTCG
CCACCACCTATTCCTGATAGTCTCTCAAAAGATGCTCAGGATTTTATCAA
GCAATGTGTACAAGTTAATCCAAATGATCGTCCCACTGCAGCTCAGCTCT
TAGACCACCCATTTGTTAAGAGACTACTTGCCACAAACTCAGGCTCAGCA
TCTCCTTATCTAGGTAGACGGTGAGGTACATATCAATTGTTAAATTACAT
TTCAGTACTTTTCCTGTTGCTGTGCTCTCCTTAACACTGGAAAGAAGAGC
TAAAACTGTGGGCGTGAATGCTTCTATTTAATACAATTAGCCTCTCTGTG
CTCCATCAGTCTCCACAGTGAGTCACACGAATTCTTCTACCATGCTTTAA
TTTTATGTTCAATGCA
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