CX288653

Overview
NameCX288653
Unique NameCX288653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288653 vs. ExPASy Swiss-Prot
Match: CNNM1_HUMAN (Metal transporter CNNM1 OS=Homo sapiens GN=CNNM1 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 58/180 (32.22%), Postives = 91/180 (50.56%), Query Frame = 2
Query:   14 FPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPT-NIIGLILVKNLLSVDYRDAVPL---RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 541
            FP+ YP+ ++LD  L +  +    R +L   +      A    DL  +E  II GALEL  K  ++ +TP+   F             + I+  G++R+PVY G+   NI+ ++ VK+L  VD  D  PL    +   R +  V  D  L  +L EF+KG SH+A+V + +N + EG+ F
Sbjct:  299 FPVCYPLGRLLDWALRQEISTFYTREKLLETLR----AADPYSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPVYEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKGKSHLAIVQR-VNNEGEGDPF 473          
BLAST of CX288653 vs. ExPASy Swiss-Prot
Match: CNNM3_HUMAN (Metal transporter CNNM3 OS=Homo sapiens GN=CNNM3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.702e-12
Identity = 54/181 (29.83%), Postives = 85/181 (46.96%), Query Frame = 2
Query:    8 LFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPL---RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 541
            L  P++ P+ ++L+L    G    LR   L+         A  GGD   D   +  G L    +T +D +TP+   F              +IM  GH+R+PVY    +NI+ ++ +K+L  VD  D  PL    +     +  V  D  L  +L EF++G SH+A+V K +N + EG+ F
Sbjct:  265 LTLPVALPVGQLLELAARPGR---LRERVLEL--------ARGGGDPYSD---LSKGVLRC--RTVEDVLTPLEDCFMLDASTVLDFGVLASIMQSGHTRIPVYEEERSNIVDMLYLKDLAFVDPEDCTPLSTITRFYNHPLHFVFNDTKLDAVLEEFKRGKSHLAIVQK-VNNEGEGDPF 428          
BLAST of CX288653 vs. ExPASy Swiss-Prot
Match: CNNM3_MOUSE (Metal transporter CNNM3 OS=Mus musculus GN=Cnnm3 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.314e-12
Identity = 52/181 (28.73%), Postives = 85/181 (46.96%), Query Frame = 2
Query:    8 LFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPL---RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 541
            L  P++ P+ ++L+L    G    LR   L+         A  GGD   D +  +     L  +T +D +TP+   F              +IM  GH+R+PVY    +NI+ ++ +K+L  V+  D  PL    +     +  V  D  L  +L EF++G SH+A+V K +N + EG+ F
Sbjct:  271 LTLPVALPVGQLLELAARPGR---LRERVLEL--------ARGGGDPYSDLSKGV-----LRSRTVEDVLTPLEDCFMLDSGTVLDFSVLASIMQSGHTRIPVYEEERSNIVDMLYLKDLAIVEPEDCTPLSTITRFYNHPLHFVFNDTKLDAVLEEFKRGKSHLAIVQK-VNNEGEGDPF 434          
The following BLAST results are available for this feature:
BLAST of CX288653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CNNM1_HUMAN1.314e-1732.22Metal transporter CNNM1 OS=Homo sapiens GN=CNNM1 P... [more]
CNNM3_HUMAN3.702e-1229.83Metal transporter CNNM3 OS=Homo sapiens GN=CNNM3 P... [more]
CNNM3_MOUSE6.314e-1228.73Metal transporter CNNM3 OS=Mus musculus GN=Cnnm3 P... [more]

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Properties
Property NameValue
Genbank descriptionC02002H02SK IF1 Citrus clementina cDNA clone C02002H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288653 ID=CX288653; Name=CX288653; organism=Citrus clementina; type=EST; length=557bp
TCTTTGTTTGTTCTTTCCTATATCTTATCCAATTAGCAAGATTTTGGATT
TGATGCTGGGTAAGGGACATGCAGTTCTTTTAAGGAGGGCAGAGCTAAAG
ACTTTTGTTAACTTTCATGGCAATGAGGCTGGGAAAGGTGGGGATCTAAC
TCATGATGAGACTACTATCATCGCTGGAGCTCTGGAGTTGACTGAAAAAA
CTGCAAAAGATGCCATGACTCCCATATCGAAGGCATTTTCTCTTGATCTG
GATGCAACACTTACTTTGGATACCTTAAATGCCATAATGACCATGGGTCA
TAGTAGAGTTCCTGTTTACTCTGGGAATCCGACAAATATAATTGGCCTCA
TTCTGGTTAAAAATCTTTTATCAGTCGATTATAGAGATGCAGTTCCTTTG
CGGAAAATGATCATACGGAGAATACCACGGGTTTCAGAAGACATGCCTTT
GTATGATATTCTAAATGAATTTCAGAAAGGACATAGCCACATTGCTGTTG
TATATAAGGATCTAAATGAGAAAAAAGAGGGTGAGCTTTTTAAGGACAAT
TGTAAGA
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