CX288724
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9_BOVIN (60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 4.444e-47 Identity = 95/159 (59.75%), Postives = 115/159 (72.33%), Query Frame = 1 Query: 1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 477 G L RDF H+N++ L+ + K++L++D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I N +EIRNFLGEK +R+V M GV S KDEL+L+GNDIELVS SAALI Q VKNKDIRKFLDGIYVSEK T+ Sbjct: 32 GTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9_PONAB (60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 9.899e-47 Identity = 95/159 (59.75%), Postives = 114/159 (71.70%), Query Frame = 1 Query: 1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 477 G L RDF H+N++ L+ + K++L++D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I N +EIRNFLGEK +R+V M GV S KDEL+L GNDIELVS SAALI Q VKNKDIRKFLDGIYVSEK T+ Sbjct: 32 GTLRRDFNHINVELSLLGKK---KKRLRVDEWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILGGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9_ICTPU (60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 9.899e-47 Identity = 96/163 (58.90%), Postives = 116/163 (71.17%), Query Frame = 1 Query: 1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 489 G L R+F H+NL+ L+ ++ +KL++D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNFLGEK +R+V M GV S KDELVL+GNDIELVS SAALI Q VKNKDIRKFLDGIYVSEK T++ E Sbjct: 32 GVLRREFNHINLELRLLGKKQ---KKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVVEPE 191
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9_DICDI (60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1 SV=2) HSP 1 Score: 182.956 bits (463), Expect = 8.380e-46 Identity = 85/159 (53.46%), Postives = 119/159 (74.84%), Query Frame = 1 Query: 1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 477 G LS+ F H ++D +L+ GK++L +D WFG+RK A I+T S + N+ITGVTKGY YKMRFVYAHFPIN ++ + + +EIRNF GEK VR++++LDG+T R++K KDE+VL GN +EL+S+S A I + +K KD+RKFLDGIYVSE++ + Sbjct: 32 GTLSKSFDHASVDINLV-----GKKELTVDLWFGNRKQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIYVSERNVL 185
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9_CAEEL (60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 2.696e-44 Identity = 88/160 (55.00%), Postives = 116/160 (72.50%), Query Frame = 1 Query: 1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 480 G + +DF+HL+++ E GK L++ WFG RK AAIRT SH+ N+I GVT G+RYKMR VYAHFPIN ++ + N+ +EIRNFLGEK VR+V + +GV S KDE+V++GND++ VS++AA I Q VK KDIRKFLDGIYVSEK+TI+ Sbjct: 32 GTIRKDFRHLHMEM-----ERIGKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIV 186
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9B_YEAST (60S ribosomal protein L9-B OS=Saccharomyces cerevisiae GN=RPL9B PE=1 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 6.871e-40 Identity = 86/162 (53.09%), Postives = 114/162 (70.37%), Query Frame = 1 Query: 1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNN--KAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 480 G L+++ KH+++ F + + +K+ G RK AA+RT S V N+ITGVTKGY+YKMR+VYAHFPIN +I + K IE+RNFLG+KK+R V + DGVT+ S VKDE+VL GN +E VS++AA + Q C V+NKDIRKFLDGIYVS K I+ Sbjct: 32 GTLTKNLKHIDVTF-----TKVNNQLIKVAVHNGDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFIV 188
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9A_YEAST (60S ribosomal protein L9-A OS=Saccharomyces cerevisiae GN=RPL9A PE=1 SV=2) HSP 1 Score: 162.925 bits (411), Expect = 8.974e-40 Identity = 86/161 (53.42%), Postives = 113/161 (70.19%), Query Frame = 1 Query: 1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNN--KAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 477 G L+++ KH+++ F + + +K+ G RK AA+RT S V N+ITGVTKGY+YKMR+VYAHFPIN +I + K IE+RNFLG+KK+R V + DGVT+ S VKDE+VL GN +E VS++AA + Q C V+NKDIRKFLDGIYVS K I Sbjct: 32 GTLTKNLKHIDVTF-----TKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFI 187
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9B_SCHPO (60S ribosomal protein L9-B OS=Schizosaccharomyces pombe GN=rpl9b PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 2.611e-39 Identity = 79/133 (59.40%), Postives = 99/133 (74.44%), Query Frame = 1 Query: 79 LKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 477 +K W GSRK +A IRTA S + N+I GVT+G+RYKMR VYAHFPIN ++ N +EIRNFLGE+ R + L GVTV S VKDE++++GN +E VS+SAA I Q C+V+NKDIRKFLDGIYVSE+ I Sbjct: 53 IKFIVWHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9A_SCHPO (60S ribosomal protein L9-A OS=Schizosaccharomyces pombe GN=rpl9a PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 3.410e-39 Identity = 81/159 (50.94%), Postives = 109/159 (68.55%), Query Frame = 1 Query: 1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 477 G L ++ +H++++ + +K W GSRK +A IR+ S + N+I GVT+G+RYKMR VYAHFPIN ++ N +EIRNFLGE+ R + L GVTV S VKDE++L+GN +E VS+SAA I Q C+V+NKDIRKFLDGIYVSE+ I Sbjct: 33 GTLKQNLRHVDIEMKKQGNT------IKFIVWHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_HYPBU (50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl6p PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 4.936e-30 Identity = 70/157 (44.59%), Postives = 104/157 (66.24%), Query Frame = 1 Query: 1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 468 G+L+RDF H + ++E GK K+ ++A+F +R+ A + T +H+ N+ITGVTKG+RYK++ VY+HFP+ + + IE NFLGEK R ++ GVTV KV KD+++++G DIE V ++AA I Q VK+KD R F+DGIY+ EK Sbjct: 33 GELTRDFSHARNIVIRLDEDEEGK-KVVVEAYFANRRVKALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKVQGDKVVIE--NFLGEKAPRIAKIMPGVTV----KVQKDDVIVEGIDIEAVGQTAANIEQATKVKDKDRRVFIDGIYIYEK 182 The following BLAST results are available for this feature:
BLAST of CX288724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 62
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288724 ID=CX288724; Name=CX288724; organism=Citrus clementina; type=EST; length=547bpback to top |