CX288724

Overview
NameCX288724
Unique NameCX288724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9_BOVIN (60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.444e-47
Identity = 95/159 (59.75%), Postives = 115/159 (72.33%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 477
            G L RDF H+N++  L+  +   K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:   32 GTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9_PONAB (60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 9.899e-47
Identity = 95/159 (59.75%), Postives = 114/159 (71.70%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 477
            G L RDF H+N++  L+  +   K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:   32 GTLRRDFNHINVELSLLGKK---KKRLRVDEWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILGGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9_ICTPU (60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 9.899e-47
Identity = 96/163 (58.90%), Postives = 116/163 (71.17%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 489
            G L R+F H+NL+  L+  ++   +KL++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +R+V M  GV    S   KDELVL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T++  E
Sbjct:   32 GVLRREFNHINLELRLLGKKQ---KKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVVEPE 191          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9_DICDI (60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 8.380e-46
Identity = 85/159 (53.46%), Postives = 119/159 (74.84%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 477
            G LS+ F H ++D +L+     GK++L +D WFG+RK  A I+T  S + N+ITGVTKGY YKMRFVYAHFPIN ++ +  + +EIRNF GEK VR++++LDG+T  R++K KDE+VL GN +EL+S+S A I  +  +K KD+RKFLDGIYVSE++ +
Sbjct:   32 GTLSKSFDHASVDINLV-----GKKELTVDLWFGNRKQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIYVSERNVL 185          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9_CAEEL (60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.696e-44
Identity = 88/160 (55.00%), Postives = 116/160 (72.50%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 480
            G + +DF+HL+++      E  GK  L++  WFG RK  AAIRT  SH+ N+I GVT G+RYKMR VYAHFPIN ++ + N+ +EIRNFLGEK VR+V + +GV    S   KDE+V++GND++ VS++AA I Q   VK KDIRKFLDGIYVSEK+TI+
Sbjct:   32 GTIRKDFRHLHMEM-----ERIGKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIV 186          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9B_YEAST (60S ribosomal protein L9-B OS=Saccharomyces cerevisiae GN=RPL9B PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.871e-40
Identity = 86/162 (53.09%), Postives = 114/162 (70.37%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNN--KAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 480
            G L+++ KH+++ F      +   + +K+    G RK  AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   +  K IE+RNFLG+KK+R V + DGVT+  S  VKDE+VL GN +E VS++AA + Q C V+NKDIRKFLDGIYVS K  I+
Sbjct:   32 GTLTKNLKHIDVTF-----TKVNNQLIKVAVHNGDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFIV 188          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9A_YEAST (60S ribosomal protein L9-A OS=Saccharomyces cerevisiae GN=RPL9A PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 8.974e-40
Identity = 86/161 (53.42%), Postives = 113/161 (70.19%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNN--KAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 477
            G L+++ KH+++ F      +   + +K+    G RK  AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   +  K IE+RNFLG+KK+R V + DGVT+  S  VKDE+VL GN +E VS++AA + Q C V+NKDIRKFLDGIYVS K  I
Sbjct:   32 GTLTKNLKHIDVTF-----TKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFI 187          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9B_SCHPO (60S ribosomal protein L9-B OS=Schizosaccharomyces pombe GN=rpl9b PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.611e-39
Identity = 79/133 (59.40%), Postives = 99/133 (74.44%), Query Frame = 1
Query:   79 LKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 477
            +K   W GSRK +A IRTA S + N+I GVT+G+RYKMR VYAHFPIN ++  N   +EIRNFLGE+  R +  L GVTV  S  VKDE++++GN +E VS+SAA I Q C+V+NKDIRKFLDGIYVSE+  I
Sbjct:   53 IKFIVWHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9A_SCHPO (60S ribosomal protein L9-A OS=Schizosaccharomyces pombe GN=rpl9a PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.410e-39
Identity = 81/159 (50.94%), Postives = 109/159 (68.55%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 477
            G L ++ +H++++     +       +K   W GSRK +A IR+  S + N+I GVT+G+RYKMR VYAHFPIN ++  N   +EIRNFLGE+  R +  L GVTV  S  VKDE++L+GN +E VS+SAA I Q C+V+NKDIRKFLDGIYVSE+  I
Sbjct:   33 GTLKQNLRHVDIEMKKQGNT------IKFIVWHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_HYPBU (50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.936e-30
Identity = 70/157 (44.59%), Postives = 104/157 (66.24%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 468
            G+L+RDF H       + ++E GK K+ ++A+F +R+  A + T  +H+ N+ITGVTKG+RYK++ VY+HFP+   +  +   IE  NFLGEK  R   ++ GVTV    KV KD+++++G DIE V ++AA I Q   VK+KD R F+DGIY+ EK
Sbjct:   33 GELTRDFSHARNIVIRLDEDEEGK-KVVVEAYFANRRVKALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKVQGDKVVIE--NFLGEKAPRIAKIMPGVTV----KVQKDDVIVEGIDIEAVGQTAANIEQATKVKDKDRRVFIDGIYIYEK 182          
The following BLAST results are available for this feature:
BLAST of CX288724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL9_BOVIN4.444e-4759.7560S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=... [more]
RL9_PONAB9.899e-4759.7560S ribosomal protein L9 OS=Pongo abelii GN=RPL9 P... [more]
RL9_ICTPU9.899e-4758.9060S ribosomal protein L9 OS=Ictalurus punctatus GN... [more]
RL9_DICDI8.380e-4653.4660S ribosomal protein L9 OS=Dictyostelium discoide... [more]
RL9_CAEEL2.696e-4455.0060S ribosomal protein L9 OS=Caenorhabditis elegans... [more]
RL9B_YEAST6.871e-4053.0960S ribosomal protein L9-B OS=Saccharomyces cerevi... [more]
RL9A_YEAST8.974e-4053.4260S ribosomal protein L9-A OS=Saccharomyces cerevi... [more]
RL9B_SCHPO2.611e-3959.4060S ribosomal protein L9-B OS=Schizosaccharomyces ... [more]
RL9A_SCHPO3.410e-3950.9460S ribosomal protein L9-A OS=Schizosaccharomyces ... [more]
RL6_HYPBU4.936e-3044.5950S ribosomal protein L6P OS=Hyperthermus butylicu... [more]

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Properties
Property NameValue
Genbank descriptionC02003F10SK IF1 Citrus clementina cDNA clone C02003F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288724 ID=CX288724; Name=CX288724; organism=Citrus clementina; type=EST; length=547bp
GGTAAGCTCAGCCGCGACTTCAAGCATTTGAACCTCGACTTCCATCTCAT
GACTGACGAGGAAACCGGTAAGCGCAAGCTTAAGATCGATGCCTGGTTCG
GCTCTCGCAAGACCAGCGCCGCCATCAGAACTGCCCTCAGCCATGTCGGC
AATCTCATCACTGGTGTTACCAAGGGCTATCGCTACAAGATGAGATTTGT
GTACGCTCACTTTCCCATCAACGCCTCCATCGGTAACAATAACAAGGCCA
TTGAGATCCGTAACTTTCTTGGAGAGAAAAAGGTTCGAAAAGTGGATATG
CTTGATGGTGTTACCGTCATTAGGTCCGATAAGGTTAAGGATGAACTCGT
TCTTGATGGAAATGACATTGAACTCGTGTCTCGCTCTGCTGCTCTAATCA
ATCAGAAATGCCATGTGAAGAACAAGGACATTAGGAAATTTCTTGATGGG
ATCTATGTCAGTGAGAAAAGCACCATACTTGGAGAAGAATGATGATTAGC
TTTCGAATTTTCTTGTCATAGTAATGTTATGAATTTTTTTTTAAATC
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