CX288724

Overview
NameCX288724
Unique NameCX288724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_IGNH4 (50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.029e-27
Identity = 64/154 (41.56%), Postives = 99/154 (64.29%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKD-ELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 459
            G+L RDF H      +   EE GK+++ ++ +F +RK  A + T  +H+ N+ITGVTKG+RYKM+ V++HFPI+  +  +   +EI NF+GEK  R   +L GVTV    KV+  +++++G DIE V+++AA I Q   +   D R F+DGIY+
Sbjct:   33 GELERDFSHAK-GIRIRVVEEEGKKQVLVETFFANRKRKALVNTVAAHIKNMITGVTKGWRYKMKIVFSHFPISVKVVGDR--VEIHNFIGEKAPRVAKVLPGVTV----KVQGRDVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIYI 179          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9_HAECO (60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.643e-25
Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDM 300
            G L RDF+HL+++      E  GK +L++  WFG RK  AAIRT  SH+ N+I GVTKG+RYKMR VYAHFPIN ++ +  + +EIRNFLGEK VR V +
Sbjct:   32 GTLKRDFRHLHMEM-----ERVGKNQLRVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPVPL 126          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_DESK1 (50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.781e-25
Identity = 60/160 (37.50%), Postives = 93/160 (58.13%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 480
            G ++RDF H    F  + D     R + ++ +   RK  A + T  +H+ N+ITGV +GYRYK++ +++HFPI  S+   NK + IRNF+GEK  R   +   V V  S    ++++++G DIE V  +AA I +   V ++D R F+DGIY+ EK   L
Sbjct:   33 GIITRDFSHARGVFIRLED-----RVVIVETFVADRKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEKGEAL 184          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_STAMF (50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.016e-24
Identity = 58/158 (36.71%), Postives = 93/158 (58.86%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-----DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 459
            G + RDF H+    +++  +E  K  + ++ +F  R+  A + T  SH+ N+I GV KGYRYK++ +Y+HFPI   + + N+ + I+NFLGEK        D +  I  + VK     ++++++G DIE V ++AA I     VK+KD R F DGIY+
Sbjct:   33 GSIERDFSHVR---NIILRKENSK--IIVETFFADRRKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKS-------DRIAKIIGEDVKVTVKGEDIIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIYI 178          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_SULTO (50S ribosomal protein L6P OS=Sulfolobus tokodaii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.700e-22
Identity = 53/164 (32.32%), Postives = 95/164 (57.93%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 489
            G++ +DF H++    +  ++     K+ ++  F  R+  A   + ++H+ N+ TGVTKGYRY ++ +Y HFP+   +  N   ++I+N +GEK +R+  ++ GV V     VK ++++++G DIE V ++AA I     +   D R F DGIY+ +K  I  E+
Sbjct:   32 GEIEKDFSHIS-GIEIRKEDN----KIVVETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSGNE--VQIQNLIGEKNIRRAKIMTGVKV----NVKGEDIIVEGQDIEKVGQTAANIELASKITGYDRRVFADGIYIYKKEVIGSEQ 184          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.330e-21
Identity = 53/132 (40.15%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   76 KLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471
            K+ +++ +  +K +A I T  SH+ N+ITGV++G+ YKM+  YAHFP+  S+  N   I+  NFLGEK  RK  +++GV V  S    +++++ G D E   ++AA I Q   V+ +D R F DGIY+ EK+
Sbjct:   53 KVVVESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKGNEVIID--NFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIYIVEKA 179          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.219e-20
Identity = 56/158 (35.44%), Postives = 92/158 (58.23%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471
            G++SR+F+   +         T   K+ ++     ++T A + T  SH+ N++TGV++GY Y M+ VYAHFPI   +   +K + I NFLGE+K R  +++    V ++ DKV    VL G + E + ++AA I Q C ++ +D R F DGIY++ K+
Sbjct:   31 GQISREFRFPGISVR------TDGGKVIVETGKDDKQTKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSKA 177          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.219e-20
Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   97 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471
            F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +  +   IE  NFLGEK  R+  +L GVTV    KVK  E++++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:   59 FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.219e-20
Identity = 56/132 (42.42%), Postives = 79/132 (59.85%), Query Frame = 1
Query:   76 KLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471
            K+ I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:   52 KVVIECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_METJA (50S ribosomal protein L6P OS=Methanocaldococcus jannaschii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.219e-20
Identity = 59/156 (37.82%), Postives = 89/156 (57.05%), Query Frame = 1
Query:    4 KLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471
            +L R F+H  +      DE      + I   +  RK  A + T  +H+ N+I GVT+G+ YK++  YAHFP+  S+  N   IE  NFLGEK  R+  +++GVTV  S    +++++ G D E V ++AA I Q   +K +D R F DGIY+ EK+
Sbjct:   34 ELRRRFEHPKIVIKKEGDE------IVIFCEYPRRKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVEKA 178          
The following BLAST results are available for this feature:
BLAST of CX288724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL6_IGNH41.029e-2741.5650S ribosomal protein L6P OS=Ignicoccus hospitalis... [more]
RL9_HAECO1.643e-2555.0060S ribosomal protein L9 (Fragment) OS=Haemonchus ... [more]
RL6_DESK14.781e-2537.5050S ribosomal protein L6P OS=Desulfurococcus kamch... [more]
RL6_STAMF9.016e-2436.7150S ribosomal protein L6P OS=Staphylothermus marin... [more]
RL6_SULTO1.700e-2232.3250S ribosomal protein L6P OS=Sulfolobus tokodaii G... [more]
RL6_META39.330e-2140.1550S ribosomal protein L6P OS=Methanococcus aeolicu... [more]
RL6_UNCMA1.219e-2035.4450S ribosomal protein L6P OS=Uncultured methanogen... [more]
RL6_PYRAB1.219e-2044.4450S ribosomal protein L6P OS=Pyrococcus abyssi GN=... [more]
RL6_METM71.219e-2042.4250S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METJA1.219e-2037.8250S ribosomal protein L6P OS=Methanocaldococcus ja... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02003F10SK IF1 Citrus clementina cDNA clone C02003F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288724 ID=CX288724; Name=CX288724; organism=Citrus clementina; type=EST; length=547bp
GGTAAGCTCAGCCGCGACTTCAAGCATTTGAACCTCGACTTCCATCTCAT
GACTGACGAGGAAACCGGTAAGCGCAAGCTTAAGATCGATGCCTGGTTCG
GCTCTCGCAAGACCAGCGCCGCCATCAGAACTGCCCTCAGCCATGTCGGC
AATCTCATCACTGGTGTTACCAAGGGCTATCGCTACAAGATGAGATTTGT
GTACGCTCACTTTCCCATCAACGCCTCCATCGGTAACAATAACAAGGCCA
TTGAGATCCGTAACTTTCTTGGAGAGAAAAAGGTTCGAAAAGTGGATATG
CTTGATGGTGTTACCGTCATTAGGTCCGATAAGGTTAAGGATGAACTCGT
TCTTGATGGAAATGACATTGAACTCGTGTCTCGCTCTGCTGCTCTAATCA
ATCAGAAATGCCATGTGAAGAACAAGGACATTAGGAAATTTCTTGATGGG
ATCTATGTCAGTGAGAAAAGCACCATACTTGGAGAAGAATGATGATTAGC
TTTCGAATTTTCTTGTCATAGTAATGTTATGAATTTTTTTTTAAATC
back to top