CX288724
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_IGNH4 (50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.029e-27 Identity = 64/154 (41.56%), Postives = 99/154 (64.29%), Query Frame = 1 Query: 1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKD-ELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 459 G+L RDF H + EE GK+++ ++ +F +RK A + T +H+ N+ITGVTKG+RYKM+ V++HFPI+ + + +EI NF+GEK R +L GVTV KV+ +++++G DIE V+++AA I Q + D R F+DGIY+ Sbjct: 33 GELERDFSHAK-GIRIRVVEEEGKKQVLVETFFANRKRKALVNTVAAHIKNMITGVTKGWRYKMKIVFSHFPISVKVVGDR--VEIHNFIGEKAPRVAKVLPGVTV----KVQGRDVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIYI 179
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL9_HAECO (60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.643e-25 Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 1 Query: 1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDM 300 G L RDF+HL+++ E GK +L++ WFG RK AAIRT SH+ N+I GVTKG+RYKMR VYAHFPIN ++ + + +EIRNFLGEK VR V + Sbjct: 32 GTLKRDFRHLHMEM-----ERVGKNQLRVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPVPL 126
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_DESK1 (50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 4.781e-25 Identity = 60/160 (37.50%), Postives = 93/160 (58.13%), Query Frame = 1 Query: 1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 480 G ++RDF H F + D R + ++ + RK A + T +H+ N+ITGV +GYRYK++ +++HFPI S+ NK + IRNF+GEK R + V V S ++++++G DIE V +AA I + V ++D R F+DGIY+ EK L Sbjct: 33 GIITRDFSHARGVFIRLED-----RVVIVETFVADRKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEKGEAL 184
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_STAMF (50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 9.016e-24 Identity = 58/158 (36.71%), Postives = 93/158 (58.86%), Query Frame = 1 Query: 1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-----DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 459 G + RDF H+ +++ +E K + ++ +F R+ A + T SH+ N+I GV KGYRYK++ +Y+HFPI + + N+ + I+NFLGEK D + I + VK ++++++G DIE V ++AA I VK+KD R F DGIY+ Sbjct: 33 GSIERDFSHVR---NIILRKENSK--IIVETFFADRRKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKS-------DRIAKIIGEDVKVTVKGEDIIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIYI 178
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_SULTO (50S ribosomal protein L6P OS=Sulfolobus tokodaii GN=rpl6p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.700e-22 Identity = 53/164 (32.32%), Postives = 95/164 (57.93%), Query Frame = 1 Query: 1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 489 G++ +DF H++ + ++ K+ ++ F R+ A + ++H+ N+ TGVTKGYRY ++ +Y HFP+ + N ++I+N +GEK +R+ ++ GV V VK ++++++G DIE V ++AA I + D R F DGIY+ +K I E+ Sbjct: 32 GEIEKDFSHIS-GIEIRKEDN----KIVVETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSGNE--VQIQNLIGEKNIRRAKIMTGVKV----NVKGEDIIVEGQDIEKVGQTAANIELASKITGYDRRVFADGIYIYKKEVIGSEQ 184
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 9.330e-21 Identity = 53/132 (40.15%), Postives = 83/132 (62.88%), Query Frame = 1 Query: 76 KLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471 K+ +++ + +K +A I T SH+ N+ITGV++G+ YKM+ YAHFP+ S+ N I+ NFLGEK RK +++GV V S +++++ G D E ++AA I Q V+ +D R F DGIY+ EK+ Sbjct: 53 KVVVESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKGNEVIID--NFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIYIVEKA 179
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_UNCMA (50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I GN=rpl6p PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.219e-20 Identity = 56/158 (35.44%), Postives = 92/158 (58.23%), Query Frame = 1 Query: 1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471 G++SR+F+ + T K+ ++ ++T A + T SH+ N++TGV++GY Y M+ VYAHFPI + +K + I NFLGE+K R +++ V ++ DKV VL G + E + ++AA I Q C ++ +D R F DGIY++ K+ Sbjct: 31 GQISREFRFPGISVR------TDGGKVIVETGKDDKQTKATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTANIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSKA 177
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.219e-20 Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = 1 Query: 97 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471 F RK A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + IE NFLGEK R+ +L GVTV KVK E++++G D E V ++AA I Q + D R F DGIY+ EK+ Sbjct: 59 FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_METM7 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl6p PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.219e-20 Identity = 56/132 (42.42%), Postives = 79/132 (59.85%), Query Frame = 1 Query: 76 KLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471 K+ I+ F + +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK R ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 52 KVVIECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_METJA (50S ribosomal protein L6P OS=Methanocaldococcus jannaschii GN=rpl6p PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.219e-20 Identity = 59/156 (37.82%), Postives = 89/156 (57.05%), Query Frame = 1 Query: 4 KLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471 +L R F+H + DE + I + RK A + T +H+ N+I GVT+G+ YK++ YAHFP+ S+ N IE NFLGEK R+ +++GVTV S +++++ G D E V ++AA I Q +K +D R F DGIY+ EK+ Sbjct: 34 ELRRRFEHPKIVIKKEGDE------IVIFCEYPRRKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVEKA 178 The following BLAST results are available for this feature:
BLAST of CX288724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 62
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288724 ID=CX288724; Name=CX288724; organism=Citrus clementina; type=EST; length=547bpback to top |