CX288724

Overview
NameCX288724
Unique NameCX288724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_AERPE (50S ribosomal protein L6P OS=Aeropyrum pernix GN=rpl6p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.219e-20
Identity = 58/160 (36.25%), Postives = 94/160 (58.75%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 477
            G++ RDF H       + D       + ++++F   +  A +     H+ N+I GV  G+RYK++ +Y+HFPIN  +   +K I I NFLGEK +R   ++ GV V    +VK  +++++G D+E V+++AA I     VK+KD RKF+DGIY+ E+  I
Sbjct:   33 GEVERDFSHARGVLIRLEDNS-----VVVESFFAKARQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYEREVI 181          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_METM5 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.591e-20
Identity = 56/132 (42.42%), Postives = 79/132 (59.85%), Query Frame = 1
Query:   76 KLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471
            K+ I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:   52 KVVIECTFPRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVTIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_PYRKO (50S ribosomal protein L6P OS=Pyrococcus kodakaraensis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.715e-20
Identity = 60/158 (37.97%), Postives = 90/158 (56.96%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471
            G+L R+ K+  +         T   K+ I   F  +K  A +RT  +H+ N+I GVT+G++Y+++ VY+HFP+   +  +   IE  NFLGEK  R+  +L GVTV    KVK  E+ ++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:   33 GELQRELKYPGVQIF------TEDGKVVIYKEFPRKKDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_PYRHO (50S ribosomal protein L6P OS=Pyrococcus horikoshii GN=rpl6p PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 1
Query:   97 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471
            F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +  +   IE  NFLGEK  R+  +L GVTV    KVK  E++++G D E   ++AA I Q   +   D R F DGIY+ EK+
Sbjct:   59 FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 56/132 (42.42%), Postives = 79/132 (59.85%), Query Frame = 1
Query:   76 KLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471
            K+ I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +++V+ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:   52 KVVIECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_PYRFU (50S ribosomal protein L6P OS=Pyrococcus furiosus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20
Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   97 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471
            F  RK  A  RT  +H+ N+I GVT+G+ YK++ VY+HFPI+  +  +   IE  NFLGEK  RK  +L GVTV    KV+  E++++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:   59 FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEKA 178          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_SULSO (50S ribosomal protein L6P OS=Sulfolobus solfataricus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20
Identity = 47/134 (35.07%), Postives = 81/134 (60.45%), Query Frame = 1
Query:   76 KLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 477
            K+ ++  F +R+  A   + +SH+ N+ITGVTKGYRY ++ +Y HFP +  +  N   ++I N +GEK  R+  +L+GV V       +++V++G ++E V+++AA I     +   D R F DGI++ +K  I
Sbjct:   52 KIVLETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGNE--VQITNLIGEKNTRRAQILEGVKVTVKG---EDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIFIYKKEVI 180          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20
Identity = 55/132 (41.67%), Postives = 78/132 (59.09%), Query Frame = 1
Query:   76 KLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471
            K+ I+  F  +  +A + T  SH+ N+I GVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:   52 KVVIECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_THEON (50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 58/157 (36.94%), Postives = 87/157 (55.41%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471
            G+L R+ K+  +         T   K+ I   F  +K  A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +  +   IE  NFLGEK  R+  +L GVTV     +  E++++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:   33 GELERELKYPGVQIF------TEDGKVVIYKEFPRKKDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_THEGJ (50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.760e-19
Identity = 59/158 (37.34%), Postives = 88/158 (55.70%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471
            G+L R+ K+  +         T   K+ +   F  +K  A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +  +   IE  NFLGEK  R+  +L GVTV    KV+  E+ ++G D E V ++AA I Q   +   D R F DGIY+ EK+
Sbjct:   33 GELERELKYPGVKIF------TEDGKVVVYKEFPRKKDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNPRRAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
The following BLAST results are available for this feature:
BLAST of CX288724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL6_AERPE1.219e-2036.2550S ribosomal protein L6P OS=Aeropyrum pernix GN=r... [more]
RL6_METM51.591e-2042.4250S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_PYRKO2.715e-2037.9750S ribosomal protein L6P OS=Pyrococcus kodakaraen... [more]
RL6_PYRHO3.545e-2043.6550S ribosomal protein L6P OS=Pyrococcus horikoshii... [more]
RL6_METMP3.545e-2042.4250S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_PYRFU4.630e-2044.4450S ribosomal protein L6P OS=Pyrococcus furiosus G... [more]
RL6_SULSO6.048e-2035.0750S ribosomal protein L6P OS=Sulfolobus solfataric... [more]
RL6_METM67.898e-2041.6750S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_THEON1.032e-1936.9450S ribosomal protein L6P OS=Thermococcus onnurine... [more]
RL6_THEGJ1.760e-1937.3450S ribosomal protein L6P OS=Thermococcus gammatol... [more]

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Properties
Property NameValue
Genbank descriptionC02003F10SK IF1 Citrus clementina cDNA clone C02003F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288724 ID=CX288724; Name=CX288724; organism=Citrus clementina; type=EST; length=547bp
GGTAAGCTCAGCCGCGACTTCAAGCATTTGAACCTCGACTTCCATCTCAT
GACTGACGAGGAAACCGGTAAGCGCAAGCTTAAGATCGATGCCTGGTTCG
GCTCTCGCAAGACCAGCGCCGCCATCAGAACTGCCCTCAGCCATGTCGGC
AATCTCATCACTGGTGTTACCAAGGGCTATCGCTACAAGATGAGATTTGT
GTACGCTCACTTTCCCATCAACGCCTCCATCGGTAACAATAACAAGGCCA
TTGAGATCCGTAACTTTCTTGGAGAGAAAAAGGTTCGAAAAGTGGATATG
CTTGATGGTGTTACCGTCATTAGGTCCGATAAGGTTAAGGATGAACTCGT
TCTTGATGGAAATGACATTGAACTCGTGTCTCGCTCTGCTGCTCTAATCA
ATCAGAAATGCCATGTGAAGAACAAGGACATTAGGAAATTTCTTGATGGG
ATCTATGTCAGTGAGAAAAGCACCATACTTGGAGAAGAATGATGATTAGC
TTTCGAATTTTCTTGTCATAGTAATGTTATGAATTTTTTTTTAAATC
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