CX288724

Overview
NameCX288724
Unique NameCX288724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_HALMA (50S ribosomal protein L6P OS=Haloarcula marismortui GN=rpl6p PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 6.258e-17
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 1
Query:  109 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 468
            KT + I T  SH+ N+  GVT+G+ Y M   Y+HFP+  ++  +   IE  NFLGEK  R+   + G T +  D   +EL + G DIE V ++AA I Q   + +KD+R F DG+Y++ K
Sbjct:   58 KTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRT-TIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.067e-16
Identity = 53/137 (38.69%), Postives = 80/137 (58.39%), Query Frame = 1
Query:   61 ETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471
            E  + ++ +DA    ++  A + T  SH+ NLI GV++G+  KM  VYAHFP+   +    K + I NFLGEKK R   +L G T ++     +E+V+ G + E V ++AA I QK  +K  D R F DGIY+ +K+
Sbjct:   45 EVREGEVVVDAESSRKEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKKPRIAKIL-GETKVKVS--GNEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.394e-16
Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 1
Query:  109 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 468
            KT + + T  SHV N+  GV++G+ YK+   Y+HFP+   +    + + I+NFLGEK  R+  +     V+  D   +E+ L G  IE V ++AA I Q   V +KD R F DG+Y+ EK
Sbjct:   58 KTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDV--EGEEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.378e-16
Identity = 57/142 (40.14%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   55 DEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSD---KVKDELV-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 468
            DE+     + I+      KTSA + T  SHV N+I GVT G+ Y+M   YAHFP+  S+  +   IE  NFLGEK  R+       T IR D   ++  E+V L G   E V ++AA I Q   V +KD R F DG+Y+++K
Sbjct:   44 DEDADADAVVIETDETDAKTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRR-------TPIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 54/140 (38.57%), Postives = 77/140 (55.00%), Query Frame = 1
Query:   46 LMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 465
            +  D E G   ++ D    + KT + + T  SHV N+  GVT+G+ Y M   Y+HFP+  S+   +  I I NFLGEK  RK   + G T +  D   +EL + G  IE V ++AA I Q   V +KD R F DG+Y++E
Sbjct:   38 ITVDVEDGAVVIETDD--DNAKTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTP-VRGDTSVEVD--GEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 53/145 (36.55%), Postives = 82/145 (56.55%), Query Frame = 1
Query:   46 LMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK---DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 471
            +M D + G+  + +DA +  ++  A + T  SH+ NL+ GV +G+  KM  VYAHFP+   +  + K + I NFLGEKK R         +I   KVK   +++ + G + E V ++AA I QK  +K  D R F DGIY+ +K+
Sbjct:   42 IMIDVKDGE--VVVDAEYARKEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKV--DGKTLIIGNFLGEKKPR------FAKIIGETKVKVSGNDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.013e-15
Identity = 49/131 (37.40%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   76 KLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 468
            ++++DA    ++  A + T  SH+ NL+ GV +G+  KM  +YAHFP+   +  + K + I NFLGEKK R   +L G T ++     +E+ + G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:   51 EVEVDAESSRKEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKV--DGKTLIIGNFLGEKKPRIAKIL-GETKVKVS--GNEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.704e-14
Identity = 46/158 (29.11%), Postives = 87/158 (55.06%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLD--GVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 468
            G+++++F + ++   +  DE      + I A   +R+  A +    +++ N+  GVT+G+ YK++ VY+HFP    +      + I NF+GE   R  +++D     VI   +   ++++ G D E V ++AA + Q  ++K++D R F DGIY+ EK
Sbjct:   50 GEVTKEFYYPDVYLWVEDDE------VVIAATRSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQ---DIIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14
Identity = 49/162 (30.25%), Postives = 84/162 (51.85%), Query Frame = 1
Query:    1 GKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKK--VRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHV--KNKDIRKFLDGIYVSEKS 471
            G++ R F      +H +        K+ ++ +F +R+    I T  SH+ N++ GV   + Y+++  Y HFP+   +  N   +E  NFLGEK   ++++  LD V V I  +K + E+V++  D E     A++I Q      K KD R+F DGI++  K+
Sbjct:   32 GEVERKF------YHPLIKLSVNDNKIILETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEGNKLIVE--NFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIWLYYKA 185          
BLAST of CX288724 vs. ExPASy Swiss-Prot
Match: RL6_PICTO (50S ribosomal protein L6P OS=Picrophilus torridus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 1
Query:   79 LKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 459
            +KI     ++ T   + T  S    LI GVTKG+ Y M+  + HFP+  S+  +   +E  NFLGEK  R   ++DG  V     VK D + ++G D   +  +AA I +  ++++ D R F DGI++
Sbjct:   52 VKIATSKNNKYTKGIVGTWYSETKLLIEGVTKGFEYHMKIDFTHFPMRVSVRGDKLIVE--NFLGEKSPRSAKIVDGCKV----SVKGDRITINGIDKRKIGETAANIERATYIRHFDARVFQDGIFL 173          
The following BLAST results are available for this feature:
BLAST of CX288724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL6_HALMA6.258e-1740.0050S ribosomal protein L6P OS=Haloarcula marismortu... [more]
RL6_METMA1.067e-1638.6950S ribosomal protein L6P OS=Methanosarcina mazei ... [more]
RL6_HALSA1.394e-1638.3350S ribosomal protein L6P OS=Halobacterium salinar... [more]
RL6_HALWD2.378e-1640.1450S ribosomal protein L6P OS=Haloquadratum walsbyi... [more]
RL6_NATPD3.106e-1638.5750S ribosomal protein L6P OS=Natronomonas pharaoni... [more]
RL6_METAC3.106e-1636.5550S ribosomal protein L6P OS=Methanosarcina acetiv... [more]
RL6_METBF2.013e-1537.4050S ribosomal protein L6P OS=Methanosarcina barker... [more]
RL6_METKA1.704e-1429.1150S ribosomal protein L6P OS=Methanopyrus kandleri... [more]
RL6_NANEQ3.797e-1430.2550S ribosomal protein L6P OS=Nanoarchaeum equitans... [more]
RL6_PICTO3.554e-1233.5950S ribosomal protein L6P OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionC02003F10SK IF1 Citrus clementina cDNA clone C02003F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288724 ID=CX288724; Name=CX288724; organism=Citrus clementina; type=EST; length=547bp
GGTAAGCTCAGCCGCGACTTCAAGCATTTGAACCTCGACTTCCATCTCAT
GACTGACGAGGAAACCGGTAAGCGCAAGCTTAAGATCGATGCCTGGTTCG
GCTCTCGCAAGACCAGCGCCGCCATCAGAACTGCCCTCAGCCATGTCGGC
AATCTCATCACTGGTGTTACCAAGGGCTATCGCTACAAGATGAGATTTGT
GTACGCTCACTTTCCCATCAACGCCTCCATCGGTAACAATAACAAGGCCA
TTGAGATCCGTAACTTTCTTGGAGAGAAAAAGGTTCGAAAAGTGGATATG
CTTGATGGTGTTACCGTCATTAGGTCCGATAAGGTTAAGGATGAACTCGT
TCTTGATGGAAATGACATTGAACTCGTGTCTCGCTCTGCTGCTCTAATCA
ATCAGAAATGCCATGTGAAGAACAAGGACATTAGGAAATTTCTTGATGGG
ATCTATGTCAGTGAGAAAAGCACCATACTTGGAGAAGAATGATGATTAGC
TTTCGAATTTTCTTGTCATAGTAATGTTATGAATTTTTTTTTAAATC
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