CX288733

Overview
NameCX288733
Unique NameCX288733
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length160
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP70_ONCVO (Heat shock 70 kDa protein (Fragment) OS=Onchocerca volvulus PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.212e-20
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFELSGIPPAPRGVPQI V
Sbjct:  183 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEV 233          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HS71B_MOUSE (Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hspa1b PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 5.212e-20
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEV 476          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HS71A_MOUSE (Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hspa1a PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.212e-20
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  TRDNNLLG+FELSGIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEV 476          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP71_SCHPO (Probable heat shock protein ssa1 OS=Schizosaccharomyces pombe GN=ssa1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.806e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K +VFSTY+DNQPGVLIQV+EGER RT+D NLLGKFELSGIPPAPRGVPQI V
Sbjct:  422 KSEVFSTYADNQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEV 474          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.890e-20
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 1
Query:    1 KEQVFSTYSDNQPGVLIQVYEGER-TRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            KEQVFSTYSDNQPGVLIQV+EGER  RTRDNNLLGKFELS IPPAPR VPQITV
Sbjct:  431 KEQVFSTYSDNQPGVLIQVFEGERRARTRDNNLLGKFELSVIPPAPRVVPQITV 484          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP71_ORYLA (Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.890e-20
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            QVFSTY+DNQPGVLIQVYEGER  T+DNNLLGKF+L+GIPPAPRGVPQI V
Sbjct:  428 QVFSTYADNQPGVLIQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEV 478          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP70_PLEWA (Heat shock 70 kDa protein OS=Pleurodeles waltlii GN=HSP70 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.890e-20
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q+F+TYSDNQPGVLIQVYEGER  T+DN+LLGKFELSGIPPAPRGVPQI V
Sbjct:  428 QIFTTYSDNQPGVLIQVYEGERAMTKDNSLLGKFELSGIPPAPRGVPQIEV 478          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP70_ONCTS (Heat shock 70 kDa protein OS=Oncorhynchus tschawytscha GN=hsp70 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.890e-20
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGV+IQVYEGER  T+DNNLLGKFELSGIPPAPRGVPQI V
Sbjct:  428 QTFTTYSDNQPGVMIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEV 478          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP7C_RAT (Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476          
The following BLAST results are available for this feature:
BLAST of CX288733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP70_ONCVO5.212e-2088.24Heat shock 70 kDa protein (Fragment) OS=Onchocerca... [more]
HS71B_MOUSE5.212e-2088.24Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hs... [more]
HS71A_MOUSE5.212e-2088.24Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hs... [more]
HSP71_SCHPO6.806e-2084.91Probable heat shock protein ssa1 OS=Schizosaccharo... [more]
HSP71_SOLLC8.890e-2090.74Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP71_ORYLA8.890e-2086.27Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=... [more]
HSP70_PLEWA8.890e-2086.27Heat shock 70 kDa protein OS=Pleurodeles waltlii G... [more]
HSP70_ONCTS8.890e-2086.27Heat shock 70 kDa protein OS=Oncorhynchus tschawyt... [more]
HSP7C_SAGOE1.161e-1986.27Heat shock cognate 71 kDa protein OS=Saguinus oedi... [more]
HSP7C_RAT1.161e-1986.27Heat shock cognate 71 kDa protein OS=Rattus norveg... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02003G09SK IF1 Citrus clementina cDNA clone C02003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288733 ID=CX288733; Name=CX288733; organism=Citrus clementina; type=EST; length=160bp
AAGGAACAAGTTTTCTCCACCTACTCAGACAACCAACCCGGTGTCCTGAT
CCAGGTGTACGAGGGTGAAAGGACAAGAACCAGGGACAATAACTTGTTGG
GCAAATTTGAGCTCTCTGGCATTCCTCCAGCTCCCAGGGGGGTTCCTCAG
ATCACTGTTT
back to top