CX288733

Overview
NameCX288733
Unique NameCX288733
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length160
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: DNAK_PSEPF (Chaperone protein dnaK OS=Pseudomonas fluorescens (strain Pf0-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.592e-11
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V
Sbjct:  422 KSQVFSTADDNQGAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEV 474
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: DNAK_PSEMY (Chaperone protein dnaK OS=Pseudomonas mendocina (strain ymp) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.592e-11
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V
Sbjct:  422 KSQVFSTADDNQSAVTIHVLQGERKQAAQNKSLGKFDLAEIPPAPRGVPQIEV 474
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: DNAK_PSEF5 (Chaperone protein dnaK OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.592e-11
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V
Sbjct:  422 KSQVFSTADDNQGAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEV 474
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: DNAK_PSEE4 (Chaperone protein dnaK OS=Pseudomonas entomophila (strain L48) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.592e-11
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V
Sbjct:  422 KSQVFSTADDNQGAVTIHVLQGERKQASQNKSLGKFDLADIPPAPRGVPQIEV 474
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: DNAK_PSEAE (Chaperone protein dnaK OS=Pseudomonas aeruginosa GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.592e-11
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V
Sbjct:  422 KSQVFSTADDNQGAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEV 474
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: DNAK_PSEAB (Chaperone protein dnaK OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.592e-11
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V
Sbjct:  422 KSQVFSTADDNQGAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEV 474
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: DNAK_PSEA8 (Chaperone protein dnaK OS=Pseudomonas aeruginosa (strain LESB58) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.592e-11
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V
Sbjct:  422 KSQVFSTADDNQGAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEV 474
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: DNAK_PSEA7 (Chaperone protein dnaK OS=Pseudomonas aeruginosa (strain PA7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.592e-11
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K QVFST  DNQ  V I V +GER +   N  LGKF+L+ IPPAPRGVPQI V
Sbjct:  422 KSQVFSTADDNQGAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEV 474
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: DNAK_PEDPA (Chaperone protein dnaK OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.592e-11
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K QVFST +DNQP V I V +GER    DN  LG+F+L+ IP APRG+PQI V
Sbjct:  395 KSQVFSTAADNQPAVDIHVLQGERPMAADNKTLGRFQLTDIPAAPRGIPQIEV 447
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: DNAK_MYCPU (Chaperone protein dnaK OS=Mycoplasma pulmonis GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.592e-11
Identity = 34/53 (64.15%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K QVFST +DNQ  V I V +GER    DN  LG+F LSGI PAPRGVPQI V
Sbjct:  394 KSQVFSTAADNQSEVTISVVQGERPMASDNKQLGQFNLSGIEPAPRGVPQIEV 446
The following BLAST results are available for this feature:
BLAST of CX288733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_PSEPF2.592e-1162.26Chaperone protein dnaK OS=Pseudomonas fluorescens ... [more]
DNAK_PSEMY2.592e-1162.26Chaperone protein dnaK OS=Pseudomonas mendocina (s... [more]
DNAK_PSEF52.592e-1162.26Chaperone protein dnaK OS=Pseudomonas fluorescens ... [more]
DNAK_PSEE42.592e-1162.26Chaperone protein dnaK OS=Pseudomonas entomophila ... [more]
DNAK_PSEAE2.592e-1162.26Chaperone protein dnaK OS=Pseudomonas aeruginosa G... [more]
DNAK_PSEAB2.592e-1162.26Chaperone protein dnaK OS=Pseudomonas aeruginosa (... [more]
DNAK_PSEA82.592e-1162.26Chaperone protein dnaK OS=Pseudomonas aeruginosa (... [more]
DNAK_PSEA72.592e-1162.26Chaperone protein dnaK OS=Pseudomonas aeruginosa (... [more]
DNAK_PEDPA2.592e-1160.38Chaperone protein dnaK OS=Pediococcus pentosaceus ... [more]
DNAK_MYCPU2.592e-1164.15Chaperone protein dnaK OS=Mycoplasma pulmonis GN=d... [more]

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Properties
Property NameValue
Genbank descriptionC02003G09SK IF1 Citrus clementina cDNA clone C02003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288733 ID=CX288733; Name=CX288733; organism=Citrus clementina; type=EST; length=160bp
AAGGAACAAGTTTTCTCCACCTACTCAGACAACCAACCCGGTGTCCTGAT
CCAGGTGTACGAGGGTGAAAGGACAAGAACCAGGGACAATAACTTGTTGG
GCAAATTTGAGCTCTCTGGCATTCCTCCAGCTCCCAGGGGGGTTCCTCAG
ATCACTGTTT
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