CX288733

Overview
NameCX288733
Unique NameCX288733
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length160
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP7C_PONAB (Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP7C_MOUSE (Heat shock cognate 71 kDa protein OS=Mus musculus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP7C_ICTPU (Heat shock cognate 71 kDa protein OS=Ictalurus punctatus GN=hsc70 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP7C_HUMAN (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP7C_HORSE (Heat shock cognate 71 kDa protein OS=Equus caballus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP7C_DANRE (Heat shock cognate 71 kDa protein OS=Danio rerio GN=hspa8 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP7C_CRIGR (Heat shock cognate 71 kDa protein OS=Cricetulus griseus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP7C_CHICK (Heat shock cognate 71 kDa protein OS=Gallus gallus GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP7C_BOVIN (Heat shock cognate 71 kDa protein OS=Bos taurus GN=HSPA8 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476
[Close]
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP72_PARBA (Heat shock 70 kDa protein 2 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=HSP70-2 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K + FST++DNQPGVLIQV+EGER RT+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  423 KSETFSTFADNQPGVLIQVFEGERARTKDNNLLGKFELTGIPPAPRGVPQIEV 475
The following BLAST results are available for this feature:
BLAST of CX288733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7C_PONAB1.161e-1986.27Heat shock cognate 71 kDa protein OS=Pongo abelii ... [more]
HSP7C_MOUSE1.161e-1986.27Heat shock cognate 71 kDa protein OS=Mus musculus ... [more]
HSP7C_ICTPU1.161e-1986.27Heat shock cognate 71 kDa protein OS=Ictalurus pun... [more]
HSP7C_HUMAN1.161e-1986.27Heat shock cognate 71 kDa protein OS=Homo sapiens ... [more]
HSP7C_HORSE1.161e-1986.27Heat shock cognate 71 kDa protein OS=Equus caballu... [more]
HSP7C_DANRE1.161e-1986.27Heat shock cognate 71 kDa protein OS=Danio rerio G... [more]
HSP7C_CRIGR1.161e-1986.27Heat shock cognate 71 kDa protein OS=Cricetulus gr... [more]
HSP7C_CHICK1.161e-1986.27Heat shock cognate 71 kDa protein OS=Gallus gallus... [more]
HSP7C_BOVIN1.161e-1986.27Heat shock cognate 71 kDa protein OS=Bos taurus GN... [more]
HSP72_PARBA1.161e-1981.13Heat shock 70 kDa protein 2 OS=Paracoccidioides br... [more]

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Properties
Property NameValue
Genbank descriptionC02003G09SK IF1 Citrus clementina cDNA clone C02003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288733 ID=CX288733; Name=CX288733; organism=Citrus clementina; type=EST; length=160bp
AAGGAACAAGTTTTCTCCACCTACTCAGACAACCAACCCGGTGTCCTGAT
CCAGGTGTACGAGGGTGAAAGGACAAGAACCAGGGACAATAACTTGTTGG
GCAAATTTGAGCTCTCTGGCATTCCTCCAGCTCCCAGGGGGGTTCCTCAG
ATCACTGTTT
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