CX288733

Overview
NameCX288733
Unique NameCX288733
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length160
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q+F+TYSDNQPGVLIQVYEGER  TRDNNLLG+F+L+GIPPAPRGVPQI V
Sbjct:  428 QIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFDLTGIPPAPRGVPQIEV 478          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HS71L_PIG (Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q+F+TYSDNQPGVLIQVYEGER  TRDNNLLG+F+L+GIPPAPRGVPQI V
Sbjct:  428 QIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFDLTGIPPAPRGVPQIEV 478          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q+F+TYSDNQPGVLIQVYEGER  TRDNNLLG+F+L+GIPPAPRGVPQI V
Sbjct:  428 QIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFDLTGIPPAPRGVPQIEV 478          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HS71L_BOVIN (Heat shock 70 kDa protein 1-like OS=Bos taurus GN=HSPA1L PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q+F+TYSDNQPGVLIQVYEGER  TRDNNLLG+F+L+GIPPAPRGVPQI V
Sbjct:  428 QIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFDLTGIPPAPRGVPQIEV 478          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP70_BRUMA (Heat shock 70 kDa protein OS=Brugia malayi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.516e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            + F+TYSDNQPGVLIQVYEGER  T+DNNLLGKFELSGIPPAPRGVPQI V
Sbjct:  425 ETFTTYSDNQPGVLIQVYEGERALTKDNNLLGKFELSGIPPAPRGVPQIEV 475          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP70_XENLA (Heat shock 70 kDa protein OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.586e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQV+EGER  T+DNNLLGKFELSGIPPAPRGVPQI V
Sbjct:  427 QSFTTYSDNQPGVLIQVFEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEV 477          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HS71L_MACFA (Heat shock 70 kDa protein 1-like OS=Macaca fascicularis GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.586e-19
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q+F+TYSDNQPGVLIQVYEGER  T+DNNLLG+F+L+GIPPAPRGVPQI V
Sbjct:  428 QIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFDLTGIPPAPRGVPQIEV 478          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HS71L_HUMAN (Heat shock 70 kDa protein 1-like OS=Homo sapiens GN=HSPA1L PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.586e-19
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q+F+TYSDNQPGVLIQVYEGER  T+DNNLLG+F+L+GIPPAPRGVPQI V
Sbjct:  428 QIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFDLTGIPPAPRGVPQIEV 478          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP7D_MANSE (Heat shock 70 kDa protein cognate 4 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.378e-19
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQV+EGER  T+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  426 QTFTTYSDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476          
The following BLAST results are available for this feature:
BLAST of CX288733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP70_ONCMY1.161e-1986.27Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]
HS71L_RAT1.161e-1984.31Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]
HS71L_PIG1.161e-1984.31Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=... [more]
HS71L_MOUSE1.161e-1984.31Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
HS71L_BOVIN1.161e-1984.31Heat shock 70 kDa protein 1-like OS=Bos taurus GN=... [more]
HSP70_BRUMA1.516e-1986.27Heat shock 70 kDa protein OS=Brugia malayi GN=HSP7... [more]
HSP70_XENLA2.586e-1986.27Heat shock 70 kDa protein OS=Xenopus laevis PE=2 S... [more]
HS71L_MACFA2.586e-1982.35Heat shock 70 kDa protein 1-like OS=Macaca fascicu... [more]
HS71L_HUMAN2.586e-1982.35Heat shock 70 kDa protein 1-like OS=Homo sapiens G... [more]
HSP7D_MANSE3.378e-1984.31Heat shock 70 kDa protein cognate 4 OS=Manduca sex... [more]

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Properties
Property NameValue
Genbank descriptionC02003G09SK IF1 Citrus clementina cDNA clone C02003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288733 ID=CX288733; Name=CX288733; organism=Citrus clementina; type=EST; length=160bp
AAGGAACAAGTTTTCTCCACCTACTCAGACAACCAACCCGGTGTCCTGAT
CCAGGTGTACGAGGGTGAAAGGACAAGAACCAGGGACAATAACTTGTTGG
GCAAATTTGAGCTCTCTGGCATTCCTCCAGCTCCCAGGGGGGTTCCTCAG
ATCACTGTTT
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