CX288733

Overview
NameCX288733
Unique NameCX288733
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length160
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP76_SAGOE (Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.378e-19
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGV IQVYEGER  T+DNNLLG+FELSGIPPAPRGVPQI V
Sbjct:  428 QTFTTYSDNQPGVFIQVYEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEV 478          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP76_HUMAN (Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSPA6 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.378e-19
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGV IQVYEGER  T+DNNLLG+FELSGIPPAPRGVPQI V
Sbjct:  428 QTFTTYSDNQPGVFIQVYEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEV 478          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP70_ECHGR (Heat shock cognate 70 kDa protein OS=Echinococcus granulosus GN=HSP70 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.378e-19
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQVYEGER   RDNNLLGKFELSGIPP PRGVPQI V
Sbjct:  428 QTFTTYSDNQPGVLIQVYEGERAMKRDNNLLGKFELSGIPPGPRGVPQIEV 478          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HS7C2_DICDI (Heat shock cognate 70 kDa protein 2 OS=Dictyostelium discoideum GN=hspE-1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.378e-19
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K Q FSTYSDNQ GVL+QVYEGER  TRDNNLLGKFEL+ IPPAPRGVPQI V
Sbjct:  423 KNQTFSTYSDNQTGVLVQVYEGERAMTRDNNLLGKFELTNIPPAPRGVPQIEV 475          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP73_PLAFA (Heat shock 70 kDa protein PPF203 (Fragment) OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.412e-19
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 1
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K Q+F+TY+DNQPGVLIQVYEGER  T+DNNLLGKF+L GIPPAPR VPQI V
Sbjct:   24 KNQIFTTYADNQPGVLIQVYEGERAMTKDNNLLGKFQLEGIPPAPRSVPQIEV 76          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP70_SCHMA (Heat shock 70 kDa protein homolog OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.762e-19
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    7 QVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            Q F+TYSDNQPGVLIQV+EGER  T+DNNLLGKFELSGIPPAPRG PQI V
Sbjct:  424 QTFTTYSDNQPGVLIQVFEGERALTKDNNLLGKFELSGIPPAPRGTPQIEV 474          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP70_ACHKL (Heat shock 70 kDa protein OS=Achlya klebsiana GN=HSP70 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.762e-19
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K Q FSTY+DNQPGVLIQV+EGER+ TRDNNLLGKF L GIPP PRGVPQI V
Sbjct:  427 KSQTFSTYADNQPGVLIQVFEGERSMTRDNNLLGKFSLDGIPPMPRGVPQIDV 479          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP70_BLAEM (Heat shock 70 kDa protein OS=Blastocladiella emersonii GN=HSP70 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.525e-19
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K + FSTY+DNQPGVLIQVYEGER RT+DNNLLGKFEL+GIPPAP  VPQI V
Sbjct:  427 KSETFSTYADNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPPRVPQIEV 479          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HS7C3_DICDI (Heat shock cognate 70 kDa protein 3 OS=Dictyostelium discoideum GN=DDB_G0293674 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.829e-19
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K Q FST++DNQ GVLIQVYEGERT T+DNNLLGKFEL+GIPPAPRG PQI V
Sbjct:  425 KTQTFSTHTDNQSGVLIQVYEGERTMTKDNNLLGKFELTGIPPAPRGTPQIEV 477          
BLAST of CX288733 vs. ExPASy Swiss-Prot
Match: HSP70_BRELC (Heat shock 70 kDa protein OS=Bremia lactucae GN=HSP70 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.284e-18
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    1 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 159
            K Q FSTY+DNQPGVLIQ++EGER+ TRDNNLLGKF L GIPP PRGVPQI V
Sbjct:  427 KSQTFSTYADNQPGVLIQLFEGERSMTRDNNLLGKFNLDGIPPMPRGVPQIDV 479          
The following BLAST results are available for this feature:
BLAST of CX288733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP76_SAGOE3.378e-1984.31Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN... [more]
HSP76_HUMAN3.378e-1984.31Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSP... [more]
HSP70_ECHGR3.378e-1986.27Heat shock cognate 70 kDa protein OS=Echinococcus ... [more]
HS7C2_DICDI3.378e-1983.02Heat shock cognate 70 kDa protein 2 OS=Dictyosteli... [more]
HSP73_PLAFA4.412e-1979.25Heat shock 70 kDa protein PPF203 (Fragment) OS=Pla... [more]
HSP70_SCHMA5.762e-1984.31Heat shock 70 kDa protein homolog OS=Schistosoma m... [more]
HSP70_ACHKL5.762e-1981.13Heat shock 70 kDa protein OS=Achlya klebsiana GN=H... [more]
HSP70_BLAEM7.525e-1981.13Heat shock 70 kDa protein OS=Blastocladiella emers... [more]
HS7C3_DICDI9.829e-1981.13Heat shock cognate 70 kDa protein 3 OS=Dictyosteli... [more]
HSP70_BRELC1.284e-1879.25Heat shock 70 kDa protein OS=Bremia lactucae GN=HS... [more]

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Properties
Property NameValue
Genbank descriptionC02003G09SK IF1 Citrus clementina cDNA clone C02003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288733 ID=CX288733; Name=CX288733; organism=Citrus clementina; type=EST; length=160bp
AAGGAACAAGTTTTCTCCACCTACTCAGACAACCAACCCGGTGTCCTGAT
CCAGGTGTACGAGGGTGAAAGGACAAGAACCAGGGACAATAACTTGTTGG
GCAAATTTGAGCTCTCTGGCATTCCTCCAGCTCCCAGGGGGGTTCCTCAG
ATCACTGTTT
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