CX288820

Overview
NameCX288820
Unique NameCX288820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 1.629e-51
Identity = 98/174 (56.32%), Postives = 132/174 (75.86%), Query Frame = 2
Query:    2 FQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQV 523
            F V+L  +KL  E      RLAALTPGF+GADIANVCNEAALIAAR +   V + HFE AI+RVIGG+E+K+K++S  E++ VAYHE+GHAV GW+L++A+PLLKV+I+PRG  ALG+AQY+P +  LLT++QL D   M+LGGR +E++    +++GA +D +KVT M  A V
Sbjct:  528 FAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVKLNHFEQAIERVIGGVERKSKLLSPEEKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRGQGALGYAQYLPGDIFLLTEQQLKDRMTMSLGGRVSEELHFPSVTSGASDDFKKVTSMATAMV 701          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.167e-49
Identity = 96/178 (53.93%), Postives = 132/178 (74.16%), Query Frame = 2
Query:    2 FQVYLKKIKLD----HEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQV 523
            + V+LK++ LD     + +  S +LA LTPGF GADIAN CNEAALIAAR  +  +T+ HFE AI+RVI GLEKK +V+SK E+R+VAYHE+GHAV GWFL++A+PLLKV+I+PRG  ALG+AQY+P +  L+++EQ      M LGGR +E++    +++GA +D +KVT+M  A V
Sbjct:  469 YLVHLKRLNLDPLLTDDMNNLSGKLATLTPGFTGADIANACNEAALIAARHNDPYITIHHFEQAIERVIAGLEKKTRVLSKEEKRSVAYHEAGHAVCGWFLKYADPLLKVSIIPRGQGALGYAQYLPPDQYLISEEQFRHRMIMALGGRVSEELHFPSVTSGAHDDFKKVTQMANAMV 646          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: RCA1_SCHPO (Mitochondrial respiratory chain complexes assembly protein rca1 OS=Schizosaccharomyces pombe GN=SPBC543.09 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 9.250e-47
Identity = 93/176 (52.84%), Postives = 127/176 (72.16%), Query Frame = 2
Query:    2 FQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQV 523
            F+V+LK IK        ++RLA LT GF GADI NVCNE ALIAAR  +++V M HFE AI+RV  GLEKK++V+S  E+ TVA+HE+GHAVAGWF+E+ +PLLKV+I+PR   ALG+A Y+P +  L+++ Q+ D   M L GR +E++  G  KI++GA +D +KVT+M  A V
Sbjct:  476 FKVHLKHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAARSNSNEVQMVHFEQAIERVTAGLEKKSRVLSPEEKNTVAHHEAGHAVAGWFMEYVDPLLKVSIIPR-AQALGYASYLPKDQYLMSRGQILDQMGMALAGRVSEEIFFGPEKITSGASDDFQKVTRMAQAYV 650          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.581e-38
Identity = 83/174 (47.70%), Postives = 115/174 (66.09%), Query Frame = 2
Query:    5 QVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQV 523
            ++Y KKIKLD E     + +A  TPGFAGAD+AN+ NEAAL+AAR +   VT   F  AI+RV+ GLEKK++V+S  E++ VAYHE GHA+ G  +     + K++IVPRG AALG+   +P E+  LL + +L D     LGGRAAE+++   I+TGA NDL++ T +    V
Sbjct:  356 EIYAKKIKLDKEVEL--KNIATRTPGFAGADLANLVNEAALLAARNKQDSVTEADFREAIERVVAGLEKKSRVLSDKEKKIVAYHEVGHALVGAVMPGGGQVAKISIVPRGMAALGYTLQMPTEDRFLLNESELRDQIATLLGGRAAEEIVFDSITTGAANDLQRATDLAEQMV 527          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.594e-36
Identity = 77/174 (44.25%), Postives = 104/174 (59.77%), Query Frame = 2
Query:    2 FQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQV 523
            F+ +LK +KL    S+YSQRLA LTPGF+G                                       KK+K++SK E+R VA+HESGHA+ GW LEH E ++KV+I PR  AALGF+Q +P +  L TKEQLF+  CM LGGRAAE +   ++++GAQ+DL KVT++ Y+ V
Sbjct:  489 FEQHLKGLKLTQPSSFYSQRLAELTPGFSGT-------------------------------------AKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQYLFTKEQLFERMCMALGGRAAEAISFSRVTSGAQDDLRKVTRIAYSMV 625          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.137e-35
Identity = 81/175 (46.29%), Postives = 115/175 (65.71%), Query Frame = 2
Query:    5 QVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVA 526
            +V++K +KL ++ +   Q +A LT G AGAD+AN+ NEAAL+A R    +V  +H + A++R I GLEKK++ IS  E++ VAYHESGHAV     + +  + KV+I+PRG AALG+    P EN  L+ K +L     + LGGRAAE+V L +ISTGA NDLE+ T +    V+
Sbjct:  352 KVHIKGVKLANDVNL--QEVAKLTAGLAGADLANIINEAALLAGRNNQKEVKQQHLKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSTRVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEEVFLEEISTGASNDLERATDIIKGMVS 524          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.792e-35
Identity = 81/175 (46.29%), Postives = 113/175 (64.57%), Query Frame = 2
Query:    5 QVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVA 526
            +V++K +KL ++     Q +A LT G AGAD+AN+ NEAAL+A R    +V  +H + A++R I GLEKK++ IS  E++ VAYHESGHAV     + +  + KV+I+PRG AALG+    P EN  L+ K +L     + LGGRAAE V L +ISTGA NDLE+ T +    V+
Sbjct:  358 KVHIKPVKLANDVDL--QEIAKLTAGLAGADLANIINEAALLAGRNNQKEVKQQHLKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDVFLQEISTGASNDLERATDIIKGMVS 530          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 3.646e-35
Identity = 81/175 (46.29%), Postives = 114/175 (65.14%), Query Frame = 2
Query:    5 QVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVA 526
            +V++K +KL ++ +   Q +A LT G AGAD+AN+ NEAAL+A R    +V  +H + A++R I GLEKK++ IS  E++ VAYHESGHAV     + +  + KV+I+PRG AALG+    P EN  L+ K +L     + LGGRAAE V L +ISTGA NDLE+ T +    V+
Sbjct:  352 KVHIKGVKLANDVNL--QEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDVFLEEISTGASNDLERATDIIKGMVS 524          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.363e-34
Identity = 75/148 (50.68%), Postives = 106/148 (71.62%), Query Frame = 2
Query:   62 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVT 502
            +A  TPGF+GAD+ N+ NEAAL+AAR ++++++M H E AIDRVI G  KK++VIS  E++ VA+HE+GH V G  LE+A+ + KVTIVPRG A  G+A  +P E+   +T+ +L D     LGGR AE+V  G++STGA ND ++ T
Sbjct:  363 IATRTPGFSGADLENLLNEAALVAARHDHTKISMIHIEEAIDRVIAGPAKKSRVISPKEKKIVAWHEAGHTVVGVKLENADMVHKVTIVPRGMAG-GYAVMLPKEDRYFMTQPELLDKIIGLLGGRVAEEVTFGEVSTGAHNDFQRAT 509          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.613e-33
Identity = 71/167 (42.51%), Postives = 116/167 (69.46%), Query Frame = 2
Query:    5 QVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL-LLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVT 502
            +++ + +KL   P    + +A +T G++GAD+ANV NEAAL+A R   +QV     + A+++ + GL+KK++VI + ERR +AYHE+GHA+AG F + A+ + K+TI+PRGT+ALG+  ++P ++  ++T++QL     + L GRAAE V  G++STGA ND+ + T
Sbjct:  320 RIHAQNVKL--APEVDLKAVARITGGYSGADLANVVNEAALLAVRSGRAQVIETDLDEAVEKTMIGLQKKSRVIREEERRIIAYHETGHALAGTFTKGADKVHKITIIPRGTSALGYTFHIPEDDRHIVTEQQLLAEVDVLLSGRAAEFVAFGEVSTGAGNDISRAT 484          
The following BLAST results are available for this feature:
BLAST of CX288820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RCA1_YEAST1.629e-5156.32Mitochondrial respiratory chain complexes assembly... [more]
AFG3_YEAST1.167e-4953.93Mitochondrial respiratory chain complexes assembly... [more]
RCA1_SCHPO9.250e-4752.84Mitochondrial respiratory chain complexes assembly... [more]
FTSH3_SYNY31.581e-3847.70Cell division protease ftsH homolog 3 OS=Synechocy... [more]
SPG7_RAT9.594e-3644.25Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
FTSH_HELPJ2.137e-3546.29Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELFE2.792e-3546.29Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELPY3.646e-3546.29Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_BACPF2.363e-3450.68Cell division protease ftsH homolog OS=Bacillus ps... [more]
FTSH_TREPA2.613e-3342.51Cell division protease ftsH homolog OS=Treponema p... [more]

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Properties
Property NameValue
Genbank descriptionC02004G06SK IF1 Citrus clementina cDNA clone C02004G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288820 ID=CX288820; Name=CX288820; organism=Citrus clementina; type=EST; length=531bp
ATTCCAAGTTTATTTGAAAAAGATCAAACTTGATCACGAACCATCTTATT
ATTCTCAGAGGCTTGCAGCACTCACTCCTGGATTTGCTGGAGCAGACATT
GCAAATGTTTGCAATGAAGCTGCTTTGATTGCTGCAAGGGGTGAAAATTC
ACAAGTCACAATGGAACATTTTGAGGCAGCTATAGATAGGGTCATTGGTG
GTCTGGAGAAGAAGAATAAGGTTATAAGCAAGTTGGAGCGCCGGACAGTT
GCTTACCATGAATCCGGCCATGCTGTTGCTGGATGGTTTCTGGAACATGC
AGAACCCTTGTTAAAAGTGACAATTGTTCCTCGAGGTACAGCTGCACTTG
GATTTGCCCAGTATGTCCCTAACGAGAACCTTCTTCTGACAAAGGAGCAG
CTTTTTGATATGACGTGTATGACCCTTGGCGGTCGAGCAGCTGAGCAGGT
TTTGTTGGGGAAGATATCTACTGGAGCTCAAAATGACTTGGAGAAGGTAA
CAAAGATGACCTATGCCCAAGTTGCCGTGTA
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