CX288866

Overview
NameCX288866
Unique NameCX288866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: AMPD1_MOUSE (AMP deaminase 1 OS=Mus musculus GN=Ampd1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.207e-29
Identity = 58/108 (53.70%), Postives = 80/108 (74.07%), Query Frame = 1
Query:   28 ITYHMRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYVYLG 351
            + +  +GL +SLS+DDP+Q H TKE L+EEY++AA+V+KLS+CD+CE+ARNSV Q G SH  K+ +LGN Y   GP GNDI +TNV  IR+ +R+ETW  E+  +  G
Sbjct:  633 LDFLQKGLMISLSTDDPMQFHFTKEPLMEEYAIAAQVFKLSTCDMCEVARNSVLQCGISHEEKAKFLGNNYLEEGPVGNDIRRTNVAQIRMAYRYETWCYELNLIAEG 740          
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: AMPD1_HUMAN (AMP deaminase 1 OS=Homo sapiens GN=AMPD1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.585e-29
Identity = 57/108 (52.78%), Postives = 79/108 (73.15%), Query Frame = 1
Query:   28 ITYHMRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYVYLG 351
            + +  +GL +SLS+DDP+Q H TKE L+EEY++AA+V+KLS+CD+CE+ARNSV Q G SH  K  +LG+ Y   GP GNDI +TNV  IR+ +R+ETW  E+  +  G
Sbjct:  635 LDFLQKGLMISLSTDDPMQFHFTKEPLMEEYAIAAQVFKLSTCDMCEVARNSVLQCGISHEEKVKFLGDNYLEEGPAGNDIRRTNVAQIRMAYRYETWCYELNLIAEG 742          
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: AMPD_YEAST (AMP deaminase OS=Saccharomyces cerevisiae GN=AMD1 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 5.070e-28
Identity = 57/103 (55.34%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   34 YHMRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYV 342
            Y  RGLNVSLS+DDPLQ   T+E L+EEYSVAA+++KLS+ D+CE+ARNSV QSG+    K HW+G  +   G  GND+ +TNVP+IRI +R++T   E++ V
Sbjct:  695 YFKRGLNVSLSTDDPLQFSYTREPLIEEYSVAAQIYKLSNVDMCELARNSVLQSGWEAQIKKHWIGKDFDKSGVEGNDVVRTNVPDIRINYRYDTLSTELELV 797          
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: AMPD_SCHPO (AMP deaminase OS=Schizosaccharomyces pombe GN=ada1 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.292e-23
Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 1
Query:   28 ITYHMRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYV 342
            +TY  RGLNVSLS+DDPLQ   T+E L+EEY+VAA+++KLS+ D+CE+ARNSV QSGF    K  WLG  +        DI +TNVP IR+ +R  T  +E+  V
Sbjct:  665 LTYFKRGLNVSLSTDDPLQFAFTREPLIEEYAVAAQIYKLSAVDMCELARNSVLQSGFERQLKERWLGVDF-------QDIDRTNVPIIRLAYRALTLTQEIALV 762          
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: YB9Z_YEAST (Uncharacterized deaminase YBR284W OS=Saccharomyces cerevisiae GN=YBR284W PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.527e-13
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 1
Query:   46 GLNVSLSSDDPLQIH-LTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLG-----NKYFIRGPG---------GNDIHKTNVPNIRIEFRHETWKEEMQYV 342
            G  +SLSS+  L  +  TKE ++EEYSVAA +++L S DLCE+ RNSV  SGFS   K+ WLG     + YF+   G          N   + NVP IR ++R  T   E + +
Sbjct:  682 GFKISLSSESILYNNSYTKEPIIEEYSVAASIYRLHSADLCELLRNSVITSGFSSTLKNKWLGVSLASHDYFVENTGFVDKWYDCKPNTSLEHNVPIIRRQYRSSTLAGEWRLI 795          
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: YJH0_YEAST (Uncharacterized deaminase YJL070C OS=Saccharomyces cerevisiae GN=YJL070C PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.340e-12
Identity = 47/114 (41.23%), Postives = 60/114 (52.63%), Query Frame = 1
Query:   46 GLNVSLSSDDPL-QIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLG-----NKYFIRGPGGND---------IHKTNVPNIRIEFRHETWKEEMQYV 342
            GL +SLSS   L     T E L+EEYSVAA ++ L+  DLCE++R SV  SG+    K+HW+G       YF    GG D           K NVP IR  +R ET  +E  +V
Sbjct:  764 GLKISLSSKSILYNSSYTLEPLIEEYSVAASIYLLNPTDLCELSRTSVLSSGYEGWYKAHWIGVGVKKAPYFEENVGGIDNWYDTAKDTSIKHNVPMIRRRYRKETLDQEWNFV 877          
The following BLAST results are available for this feature:
BLAST of CX288866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
AMPD1_MOUSE1.207e-2953.70AMP deaminase 1 OS=Mus musculus GN=Ampd1 PE=2 SV=1[more]
AMPD1_HUMAN4.585e-2952.78AMP deaminase 1 OS=Homo sapiens GN=AMPD1 PE=1 SV=1[more]
AMPD_YEAST5.070e-2855.34AMP deaminase OS=Saccharomyces cerevisiae GN=AMD1 ... [more]
AMPD_SCHPO1.292e-2352.38AMP deaminase OS=Schizosaccharomyces pombe GN=ada1... [more]
YB9Z_YEAST3.527e-1340.35Uncharacterized deaminase YBR284W OS=Saccharomyces... [more]
YJH0_YEAST1.340e-1241.23Uncharacterized deaminase YJL070C OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC02006C10SK IF1 Citrus clementina cDNA clone C02006C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288866 ID=CX288866; Name=CX288866; organism=Citrus clementina; type=EST; length=504bp
ATTTGGCTGCTGCATTCCTTTTATGTAATAACATATCACATGCGCGGCCT
GAATGTTTCACTCTCGTCTGATGATCCTTTGCAAATCCACTTAACAAAAG
AAGCACTTGTGGAAGAGTATAGTGTTGCGGCAAAGGTGTGGAAGCTCAGT
TCTTGTGACCTATGTGAGATAGCAAGAAATTCTGTTTATCAATCAGGATT
TTCGCATATGGCAAAGTCACACTGGCTTGGTAATAAATACTTCATCAGAG
GCCCAGGAGGAAATGATATTCATAAGACGAATGTACCGAATATAAGAATT
GAGTTTCGACATGAGACATGGAAGGAAGAGATGCAGTATGTCTACTTGGG
AAGGGCCATTATTCCTGTAGAAATAGACACCTGATGGAATTGAAATGGGA
GAATAAAGCATTTTTGAGCTTAGCGGGGACTTACTCCTACTGAATGGTCA
GATCTACTAATAACCCTCAATAATTTAGTAACTTCAATCAGTGGGTAGAG
CTCA
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