CX288877

Overview
NameCX288877
Unique NameCX288877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length231
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_LODEL (ATP-dependent RNA helicase DBP3 OS=Lodderomyces elongisporus GN=DBP3 PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.595e-22
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E++L R+ +KVAAIHG  +Q +RT++L  FK G C L++ATDVAARGLDIP+V+ VIN +FPLT EDYVHR+GRT
Sbjct:  390 IESLLHRNKFKVAAIHGDLSQQQRTQALQSFKSGECNLLLATDVAARGLDIPNVKYVINLTFPLTIEDYVHRLGRT 465          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_CANAL (ATP-dependent RNA helicase DBP3 OS=Candida albicans GN=DBP3 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.595e-22
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +EN L+R+ + VAAIHG  +Q +RT +LS FK G   L++ATDVAARGLDIP+V+VVIN +FPLT EDYVHRIGRT
Sbjct:  416 IENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRT 491          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_ASPFU (ATP-dependent RNA helicase dbp3 OS=Aspergillus fumigatus GN=dbp3 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.595e-22
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E +LR   +KVA IHG   QHER KSL  FK G+  ++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRT
Sbjct:  354 VERLLRSKNFKVAGIHGDLNQHERFKSLEAFKTGSATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRT 429          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_NEUCR (ATP-dependent RNA helicase dbp-3 OS=Neurospora crassa GN=dbp-3 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.308e-22
Identity = 50/76 (65.79%), Postives = 60/76 (78.95%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E  L R G KVA+IHG   Q +RT+SL  FK GT  ++VATDVAARGLDIP+V++VIN +FPLT EDYVHRIGRT
Sbjct:  466 VEQFLSRKGIKVASIHGDLRQDQRTRSLEAFKSGTTTVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRT 541          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_NEOFI (ATP-dependent RNA helicase dbp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp3 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.308e-22
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E +LR   +KVA IHG   QHER KSL  FK G   ++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRT
Sbjct:  354 VERLLRTKNFKVAGIHGDLNQHERFKSLEAFKTGAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRT 429          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_DEBHA (ATP-dependent RNA helicase DBP3 OS=Debaryomyces hansenii GN=DBP3 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.544e-22
Identity = 48/76 (63.16%), Postives = 62/76 (81.58%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +EN+L R+ +KV+A+HG  +Q +RT +L  FK G   L++ATDVAARGLDIP+V+VVIN +FPLT EDYVHRIGRT
Sbjct:  379 IENLLVRNSFKVSAVHGDLSQQQRTSALGAFKAGKTTLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRT 454          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_EMENI (ATP-dependent RNA helicase dbp3 OS=Emericella nidulans GN=dbp3 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.628e-21
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E +LR  G+KVA IHG  +Q ER +SL  FK G   ++VATDVAARGLDIP V++V+N +FPLT EDYVHRIGRT
Sbjct:  339 VERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRT 414          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_ASHGO (ATP-dependent RNA helicase DBP3 OS=Ashbya gossypii GN=DBP3 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.628e-21
Identity = 49/76 (64.47%), Postives = 62/76 (81.58%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E  L+ +G+ VAAIHG  +Q +RT++LS FK GT  L++ATDVAARGLDIP+V+ VIN +FPLT EDYVHRIGRT
Sbjct:  387 VERNLKYNGYNVAAIHGDLSQQQRTQALSEFKAGTANLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRT 462          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_YARLI (ATP-dependent RNA helicase DBP3 OS=Yarrowia lipolytica GN=DBP3 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.126e-21
Identity = 49/76 (64.47%), Postives = 62/76 (81.58%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +EN L R G+ VAAIHG  +Q +RTK+L  FK+G   +++ATDVAARGLDIP+V++VIN +FPLT EDYVHRIGRT
Sbjct:  384 VENTLTRRGYGVAAIHGDLSQQQRTKALDEFKKGEKNILLATDVAARGLDIPNVKLVINLTFPLTVEDYVHRIGRT 459          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_KLULA (ATP-dependent RNA helicase DBP3 OS=Kluyveromyces lactis GN=DBP3 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.126e-21
Identity = 48/76 (63.16%), Postives = 62/76 (81.58%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E  L+ +G+ VAAIHG  +Q +RT++L+ FK G C L++ATDVAARGLDIP+V+ VIN +FPLT EDYVHRIGRT
Sbjct:  356 VERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRT 431          
The following BLAST results are available for this feature:
BLAST of CX288877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP3_LODEL5.595e-2263.16ATP-dependent RNA helicase DBP3 OS=Lodderomyces el... [more]
DBP3_CANAL5.595e-2265.79ATP-dependent RNA helicase DBP3 OS=Candida albican... [more]
DBP3_ASPFU5.595e-2265.79ATP-dependent RNA helicase dbp3 OS=Aspergillus fum... [more]
DBP3_NEUCR7.308e-2265.79ATP-dependent RNA helicase dbp-3 OS=Neurospora cra... [more]
DBP3_NEOFI7.308e-2265.79ATP-dependent RNA helicase dbp3 OS=Neosartorya fis... [more]
DBP3_DEBHA9.544e-2263.16ATP-dependent RNA helicase DBP3 OS=Debaryomyces ha... [more]
DBP3_EMENI1.628e-2163.16ATP-dependent RNA helicase dbp3 OS=Emericella nidu... [more]
DBP3_ASHGO1.628e-2164.47ATP-dependent RNA helicase DBP3 OS=Ashbya gossypii... [more]
DBP3_YARLI2.126e-2164.47ATP-dependent RNA helicase DBP3 OS=Yarrowia lipoly... [more]
DBP3_KLULA2.126e-2163.16ATP-dependent RNA helicase DBP3 OS=Kluyveromyces l... [more]

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Properties
Property NameValue
Genbank descriptionC02006D10SK IF1 Citrus clementina cDNA clone C02006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288877 ID=CX288877; Name=CX288877; organism=Citrus clementina; type=EST; length=231bp
GTCTTGAAAATATGCTGCGGCGAAGTGGTTGGAAGGTCGCTGCAATACAT
GGTAAGAAAGCACAGCATGAACGTACAAAGTCACTGTCATTATTCAAGGA
GGGAACTTGTCCATTGATGGTTGCTACTGACGTTGCTGCTCGAGGATTGG
ATATTCCAGATGTTGAAGTAGTTATTAACTATTCTTTCCCTTTAACCACG
GAGGATTATGTTCACAGAATTGGTAGGACTG
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