CX288877

Overview
NameCX288877
Unique NameCX288877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length231
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_ASPOR (ATP-dependent RNA helicase dbp3 OS=Aspergillus oryzae GN=dbp3 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.126e-21
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E +LR  G+KVA IHG  +Q ER +SL  FK G   ++VATDVAARGLDIP V+ VIN +FPLT EDYVHRIGRT
Sbjct:  349 IERLLRTKGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPSVKQVINVTFPLTVEDYVHRIGRT 424          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_AJECN (ATP-dependent RNA helicase DBP3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP3 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.627e-21
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E  +R  G+KVA IHG   Q ER  SL  FK G+ P++VATDVAARGLDIP V++V+N +FPLT EDYVHRIGRT
Sbjct:  338 IERFIRSKGFKVAGIHGDMNQTERFNSLDAFKSGSVPVLVATDVAARGLDIPAVKLVLNVTFPLTVEDYVHRIGRT 413          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_ASPNC (ATP-dependent RNA helicase dbp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.737e-21
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E +L   G+KVA IHG   Q ER KSL  FK+G   ++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRT
Sbjct:  346 VERLLWNKGFKVAGIHGDLGQQERFKSLESFKKGVSTVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRT 421          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_CANGA (ATP-dependent RNA helicase DBP3 OS=Candida glabrata GN=DBP3 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.079e-21
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E  L  +G+KVAAIHG  +Q +RT++L+ FK G   L++ATDVAARGLDIP+V+ VIN +FPLT EDYVHRIGRT
Sbjct:  392 VERNLNYNGYKVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRT 467          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_ASPTN (ATP-dependent RNA helicase dbp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp3 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.055e-20
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E  L+  G+KVA IHG  +Q ER +SL  FK G   ++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRT
Sbjct:  344 IERFLQSRGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPAVKLVINVTFPLTVEDYVHRIGRT 419          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_CHAGB (ATP-dependent RNA helicase DBP3 OS=Chaetomium globosum GN=DBP3 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.378e-20
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E  L R G +V +IHG   Q +RT+SL  FK GT  ++VATDVAARGLDIP+V++VIN +FPLT EDYVHRIGRT
Sbjct:  468 VEQNLERRGIRVCSIHGDLRQDQRTRSLESFKAGTTSVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRT 543          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_YEAST (ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae GN=DBP3 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.800e-20
Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E  L+ +G+ VAAIHG  +Q +RT++L+ FK G   L++ATDVAARGLDIP+V+ VIN +FPLT EDYVHRIGRT
Sbjct:  375 VERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRT 450          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_YEAS7 (ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP3 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.351e-20
Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E  L+ +G+ +AAIHG  +Q +RT++L+ FK G   L++ATDVAARGLDIP+V+ VIN +FPLT EDYVHRIGRT
Sbjct:  375 VERNLKYNGYNIAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRT 450          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.070e-20
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 3
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            LR  GW   AIHG K Q ER + L+ FK G  P+M ATDVAARGLD+ D++ V+NY FP T EDY+HRIGRT
Sbjct:  430 LRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRT 501          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_COCIM (ATP-dependent RNA helicase DBP3 OS=Coccidioides immitis GN=DBP3 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.010e-20
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E  +   G+KVA IHG  +Q ER +SL  FK G+  L+VATDVAARGLDIP V++V+N +FPLT EDYVHRIGRT
Sbjct:  366 VERFIGSKGFKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFPLTIEDYVHRIGRT 441          
The following BLAST results are available for this feature:
BLAST of CX288877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP3_ASPOR2.126e-2164.47ATP-dependent RNA helicase dbp3 OS=Aspergillus ory... [more]
DBP3_AJECN3.627e-2163.16ATP-dependent RNA helicase DBP3 OS=Ajellomyces cap... [more]
DBP3_ASPNC4.737e-2164.47ATP-dependent RNA helicase dbp3 OS=Aspergillus nig... [more]
DBP3_CANGA8.079e-2163.16ATP-dependent RNA helicase DBP3 OS=Candida glabrat... [more]
DBP3_ASPTN1.055e-2063.16ATP-dependent RNA helicase dbp3 OS=Aspergillus ter... [more]
DBP3_CHAGB1.378e-2063.16ATP-dependent RNA helicase DBP3 OS=Chaetomium glob... [more]
DBP3_YEAST1.800e-2061.84ATP-dependent RNA helicase DBP3 OS=Saccharomyces c... [more]
DBP3_YEAS72.351e-2060.53ATP-dependent RNA helicase DBP3 OS=Saccharomyces c... [more]
RH30_ARATH3.070e-2061.11DEAD-box ATP-dependent RNA helicase 30 OS=Arabidop... [more]
DBP3_COCIM4.010e-2061.84ATP-dependent RNA helicase DBP3 OS=Coccidioides im... [more]

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Properties
Property NameValue
Genbank descriptionC02006D10SK IF1 Citrus clementina cDNA clone C02006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288877 ID=CX288877; Name=CX288877; organism=Citrus clementina; type=EST; length=231bp
GTCTTGAAAATATGCTGCGGCGAAGTGGTTGGAAGGTCGCTGCAATACAT
GGTAAGAAAGCACAGCATGAACGTACAAAGTCACTGTCATTATTCAAGGA
GGGAACTTGTCCATTGATGGTTGCTACTGACGTTGCTGCTCGAGGATTGG
ATATTCCAGATGTTGAAGTAGTTATTAACTATTCTTTCCCTTTAACCACG
GAGGATTATGTTCACAGAATTGGTAGGACTG
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