CX288877

Overview
NameCX288877
Unique NameCX288877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length231
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_VANPO (ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP3 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.237e-20
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E  L  +G+KV+AIHG  +Q +RT +L  FK G   +++ATDVAARGLDIP+V+ VIN +FPLT EDYVHRIGRT
Sbjct:  382 VERNLNYNGYKVSAIHGDLSQQQRTNALDEFKTGRSSILLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRT 457          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_CRYNE (ATP-dependent RNA helicase DBP3 OS=Cryptococcus neoformans GN=DBP3 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.933e-20
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            LE  +RR+G+ V A+HG   Q  R K+L  FK G   ++VATDVAARGLDIPDV +VIN +FPLTTED+VHR GRT
Sbjct:  455 LEYTIRRAGYAVGALHGDMTQEARFKALEAFKTGQQNVLVATDVAARGLDIPDVGLVINVTFPLTTEDFVHRCGRT 530          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH30_ORYSJ (DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica GN=Os01g0911100 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.167e-19
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 3
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            LR  GW   +IHG KAQ ER   L+ FK G  P+M ATDVAARGLD+ D++ VIN+ FP T EDY+HRIGRT
Sbjct:  516 LRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRT 587          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.524e-19
Identity = 46/76 (60.53%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR  GW   +IHG K+Q ER   LS FK G  P+M ATDVAARGLD+ DV+ VINY FP + EDYVHRIGRT
Sbjct:  352 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRT 427          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX5_PONAB (Probable ATP-dependent RNA helicase DDX5 OS=Pongo abelii GN=DDX5 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.524e-19
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   +RR GW    IHG K+Q ER   L+ FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT
Sbjct:  357 LTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX5_PANTR (Probable ATP-dependent RNA helicase DDX5 OS=Pan troglodytes GN=DDX5 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.524e-19
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   +RR GW    IHG K+Q ER   L+ FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT
Sbjct:  357 LTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX5_MOUSE (Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus GN=Ddx5 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.524e-19
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   +RR GW    IHG K+Q ER   L+ FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT
Sbjct:  357 LTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX5_HUMAN (Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens GN=DDX5 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.524e-19
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   +RR GW    IHG K+Q ER   L+ FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT
Sbjct:  357 LTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.990e-19
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 3
Query:    9 NMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            N+ R+ G   +AIHG K+Q ER   LS F+ G CP++VATDVAARGLDI D+ VV+NY FP   EDYVHRIGRT
Sbjct:  444 NLARQYG--ASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRT 515          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX5_MACFA (Probable ATP-dependent RNA helicase DDX5 OS=Macaca fascicularis GN=DDX5 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.990e-19
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   +RR GW    IHG K+Q ER   L+ FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT
Sbjct:  357 LTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432          
The following BLAST results are available for this feature:
BLAST of CX288877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP3_VANPO5.237e-2060.53ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma... [more]
DBP3_CRYNE8.933e-2061.84ATP-dependent RNA helicase DBP3 OS=Cryptococcus ne... [more]
RH30_ORYSJ1.167e-1961.11DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sa... [more]
RH20_ORYSJ1.524e-1960.53DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sa... [more]
DDX5_PONAB1.524e-1955.26Probable ATP-dependent RNA helicase DDX5 OS=Pongo ... [more]
DDX5_PANTR1.524e-1955.26Probable ATP-dependent RNA helicase DDX5 OS=Pan tr... [more]
DDX5_MOUSE1.524e-1955.26Probable ATP-dependent RNA helicase DDX5 OS=Mus mu... [more]
DDX5_HUMAN1.524e-1955.26Probable ATP-dependent RNA helicase DDX5 OS=Homo s... [more]
RH14_ORYSJ1.990e-1962.16DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sa... [more]
DDX5_MACFA1.990e-1955.26Probable ATP-dependent RNA helicase DDX5 OS=Macaca... [more]

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Properties
Property NameValue
Genbank descriptionC02006D10SK IF1 Citrus clementina cDNA clone C02006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288877 ID=CX288877; Name=CX288877; organism=Citrus clementina; type=EST; length=231bp
GTCTTGAAAATATGCTGCGGCGAAGTGGTTGGAAGGTCGCTGCAATACAT
GGTAAGAAAGCACAGCATGAACGTACAAAGTCACTGTCATTATTCAAGGA
GGGAACTTGTCCATTGATGGTTGCTACTGACGTTGCTGCTCGAGGATTGG
ATATTCCAGATGTTGAAGTAGTTATTAACTATTCTTTCCCTTTAACCACG
GAGGATTATGTTCACAGAATTGGTAGGACTG
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