CX288877
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_VANPO (ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP3 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 5.237e-20 Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 +E L +G+KV+AIHG +Q +RT +L FK G +++ATDVAARGLDIP+V+ VIN +FPLT EDYVHRIGRT Sbjct: 382 VERNLNYNGYKVSAIHGDLSQQQRTNALDEFKTGRSSILLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRT 457
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_CRYNE (ATP-dependent RNA helicase DBP3 OS=Cryptococcus neoformans GN=DBP3 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.933e-20 Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 LE +RR+G+ V A+HG Q R K+L FK G ++VATDVAARGLDIPDV +VIN +FPLTTED+VHR GRT Sbjct: 455 LEYTIRRAGYAVGALHGDMTQEARFKALEAFKTGQQNVLVATDVAARGLDIPDVGLVINVTFPLTTEDFVHRCGRT 530
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH30_ORYSJ (DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica GN=Os01g0911100 PE=2 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 1.167e-19 Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 3 Query: 15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 LR GW +IHG KAQ ER L+ FK G P+M ATDVAARGLD+ D++ VIN+ FP T EDY+HRIGRT Sbjct: 516 LRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRT 587
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 1.524e-19 Identity = 46/76 (60.53%), Postives = 53/76 (69.74%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 + LR GW +IHG K+Q ER LS FK G P+M ATDVAARGLD+ DV+ VINY FP + EDYVHRIGRT Sbjct: 352 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRT 427
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX5_PONAB (Probable ATP-dependent RNA helicase DDX5 OS=Pongo abelii GN=DDX5 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.524e-19 Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 L +RR GW IHG K+Q ER L+ FK G P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT Sbjct: 357 LTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX5_PANTR (Probable ATP-dependent RNA helicase DDX5 OS=Pan troglodytes GN=DDX5 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.524e-19 Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 L +RR GW IHG K+Q ER L+ FK G P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT Sbjct: 357 LTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX5_MOUSE (Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus GN=Ddx5 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.524e-19 Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 L +RR GW IHG K+Q ER L+ FK G P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT Sbjct: 357 LTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX5_HUMAN (Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens GN=DDX5 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.524e-19 Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 L +RR GW IHG K+Q ER L+ FK G P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT Sbjct: 357 LTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.990e-19 Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 3 Query: 9 NMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 N+ R+ G +AIHG K+Q ER LS F+ G CP++VATDVAARGLDI D+ VV+NY FP EDYVHRIGRT Sbjct: 444 NLARQYG--ASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRT 515
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX5_MACFA (Probable ATP-dependent RNA helicase DDX5 OS=Macaca fascicularis GN=DDX5 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.990e-19 Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 L +RR GW IHG K+Q ER L+ FK G P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT Sbjct: 357 LTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432 The following BLAST results are available for this feature:
BLAST of CX288877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288877 ID=CX288877; Name=CX288877; organism=Citrus clementina; type=EST; length=231bpback to top |