CX288877
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_USTMA (ATP-dependent RNA helicase DBP2 OS=Ustilago maydis GN=DBP2 PE=3 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 1.990e-19 Identity = 45/76 (59.21%), Postives = 52/76 (68.42%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 L LR+ GW AIHG K Q ER L+ FK G P+MVAT VA+RGLD+ D+ VINY FP TEDYVH+IGRT Sbjct: 392 LTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRSPIMVATAVASRGLDVKDISYVINYDFPTNTEDYVHQIGRT 467
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.394e-19 Identity = 45/76 (59.21%), Postives = 53/76 (69.74%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 + LR GW +IHG K+Q ER LS F+ G P+M ATDVAARGLD+ DV+ VINY FP + EDYVHRIGRT Sbjct: 360 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRT 435
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX17_MOUSE (Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.433e-19 Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 L +RR GW IHG K+Q ER L+ F+ G P+++ATDVA+RGLD+ DV+ VINY +P ++EDYVHRIGRT Sbjct: 355 LTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 430
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX17_HUMAN (Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.433e-19 Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 L +RR GW IHG K+Q ER L+ F+ G P+++ATDVA+RGLD+ DV+ VINY +P ++EDYVHRIGRT Sbjct: 355 LTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 430
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX17_DICDI (Probable ATP-dependent RNA helicase ddx17 OS=Dictyostelium discoideum GN=ddx17 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.876e-19 Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 L+ +L+ SG+K IHG K+Q ER LS FK G P+M+ATDVA+RGLDI D++ V+NY FP T E Y+HRIGRT Sbjct: 645 LQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRT 720
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_SCHPO (ATP-dependent RNA helicase dbp3 OS=Schizosaccharomyces pombe GN=dbp3 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.876e-19 Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 +E L R + V IHG +Q R ++L+ FK G CP++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRT Sbjct: 433 VEGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRT 507
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.290e-18 Identity = 44/76 (57.89%), Postives = 51/76 (67.11%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 L LR GW AIHG K Q ER L+ FK G P+M+ATDVA+RGLD+ D+ VINY FP EDY+HRIGRT Sbjct: 372 LTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRT 447
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 1.685e-18 Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 3 Query: 39 AAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 +AIHG K+Q ER K LS F+ G P++VATDVAARGLDI D+ VVINY FP EDYVHRIGRT Sbjct: 422 SAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRT 485
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_YARLI (ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica GN=DBP2 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.685e-18 Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 + LR+ GW AIHG K Q ER L+ F++G P+MVATDVA+RG+D+ + VINY +P +EDYVHRIGRT Sbjct: 379 ITKFLRQDGWPALAIHGDKQQQERDWVLNEFRQGKSPIMVATDVASRGIDVKGINFVINYDYPSNSEDYVHRIGRT 454
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_SCHPO (ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe GN=dbp2 PE=2 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 2.200e-18 Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 3 Query: 3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230 + LR+ GW AIHG KAQ ER L+ F+ G P+MVATDVA+RG+D+ + V NY FP TEDYVHRIGRT Sbjct: 385 ITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRT 460 The following BLAST results are available for this feature:
BLAST of CX288877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288877 ID=CX288877; Name=CX288877; organism=Citrus clementina; type=EST; length=231bpback to top |