CX288877

Overview
NameCX288877
Unique NameCX288877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length231
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_USTMA (ATP-dependent RNA helicase DBP2 OS=Ustilago maydis GN=DBP2 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.990e-19
Identity = 45/76 (59.21%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   LR+ GW   AIHG K Q ER   L+ FK G  P+MVAT VA+RGLD+ D+  VINY FP  TEDYVH+IGRT
Sbjct:  392 LTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRSPIMVATAVASRGLDVKDISYVINYDFPTNTEDYVHQIGRT 467          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.394e-19
Identity = 45/76 (59.21%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR  GW   +IHG K+Q ER   LS F+ G  P+M ATDVAARGLD+ DV+ VINY FP + EDYVHRIGRT
Sbjct:  360 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRT 435          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX17_MOUSE (Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.433e-19
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   +RR GW    IHG K+Q ER   L+ F+ G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDYVHRIGRT
Sbjct:  355 LTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 430          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX17_HUMAN (Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.433e-19
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   +RR GW    IHG K+Q ER   L+ F+ G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDYVHRIGRT
Sbjct:  355 LTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 430          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DDX17_DICDI (Probable ATP-dependent RNA helicase ddx17 OS=Dictyostelium discoideum GN=ddx17 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.876e-19
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L+ +L+ SG+K   IHG K+Q ER   LS FK G  P+M+ATDVA+RGLDI D++ V+NY FP T E Y+HRIGRT
Sbjct:  645 LQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRT 720          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_SCHPO (ATP-dependent RNA helicase dbp3 OS=Schizosaccharomyces pombe GN=dbp3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.876e-19
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E  L R  + V  IHG  +Q  R ++L+ FK G CP++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRT
Sbjct:  433 VEGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRT 507          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.290e-18
Identity = 44/76 (57.89%), Postives = 51/76 (67.11%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   LR  GW   AIHG K Q ER   L+ FK G  P+M+ATDVA+RGLD+ D+  VINY FP   EDY+HRIGRT
Sbjct:  372 LTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRT 447          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.685e-18
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 3
Query:   39 AAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +AIHG K+Q ER K LS F+ G  P++VATDVAARGLDI D+ VVINY FP   EDYVHRIGRT
Sbjct:  422 SAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRT 485          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_YARLI (ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica GN=DBP2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.685e-18
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   AIHG K Q ER   L+ F++G  P+MVATDVA+RG+D+  +  VINY +P  +EDYVHRIGRT
Sbjct:  379 ITKFLRQDGWPALAIHGDKQQQERDWVLNEFRQGKSPIMVATDVASRGIDVKGINFVINYDYPSNSEDYVHRIGRT 454          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_SCHPO (ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe GN=dbp2 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.200e-18
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   AIHG KAQ ER   L+ F+ G  P+MVATDVA+RG+D+  +  V NY FP  TEDYVHRIGRT
Sbjct:  385 ITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRT 460          
The following BLAST results are available for this feature:
BLAST of CX288877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_USTMA1.990e-1959.21ATP-dependent RNA helicase DBP2 OS=Ustilago maydis... [more]
RH20_ARATH3.394e-1959.21DEAD-box ATP-dependent RNA helicase 20 OS=Arabidop... [more]
DDX17_MOUSE4.433e-1955.26Probable ATP-dependent RNA helicase DDX17 OS=Mus m... [more]
DDX17_HUMAN4.433e-1955.26Probable ATP-dependent RNA helicase DDX17 OS=Homo ... [more]
DDX17_DICDI9.876e-1957.89Probable ATP-dependent RNA helicase ddx17 OS=Dicty... [more]
DBP3_SCHPO9.876e-1960.53ATP-dependent RNA helicase dbp3 OS=Schizosaccharom... [more]
DBP2_CRYNE1.290e-1857.89ATP-dependent RNA helicase DBP2-A OS=Cryptococcus ... [more]
RH40_ORYSJ1.685e-1868.75DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sa... [more]
DBP2_YARLI1.685e-1853.95ATP-dependent RNA helicase DBP2 OS=Yarrowia lipoly... [more]
DBP2_SCHPO2.200e-1856.58ATP-dependent RNA helicase dbp2 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionC02006D10SK IF1 Citrus clementina cDNA clone C02006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288877 ID=CX288877; Name=CX288877; organism=Citrus clementina; type=EST; length=231bp
GTCTTGAAAATATGCTGCGGCGAAGTGGTTGGAAGGTCGCTGCAATACAT
GGTAAGAAAGCACAGCATGAACGTACAAAGTCACTGTCATTATTCAAGGA
GGGAACTTGTCCATTGATGGTTGCTACTGACGTTGCTGCTCGAGGATTGG
ATATTCCAGATGTTGAAGTAGTTATTAACTATTCTTTCCCTTTAACCACG
GAGGATTATGTTCACAGAATTGGTAGGACTG
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