CX288877

Overview
NameCX288877
Unique NameCX288877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length231
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RHLB_ESCF3 (ATP-dependent RNA helicase rhlB OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rhlB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 3 
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   G +V  + G  AQ +R + L  F  G   ++VATDVAARGL IP V  V NY  P   EDYVHRIGRT
Sbjct:  276 LAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 347
[Close]
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RHLB_ERWT9 (ATP-dependent RNA helicase rhlB OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rhlB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 37/72 (51.39%), Postives = 44/72 (61.11%), Query Frame = 3 
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   G +V  + G  AQ +R + L  F +G   ++VATDVAARGL IP V  V NY  P   EDYVHRIGRT
Sbjct:  276 LAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRT 347
[Close]
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RHLB_ENTS8 (ATP-dependent RNA helicase rhlB OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rhlB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 3 
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   G +V  + G  AQ +R + L  F  G   ++VATDVAARGL IP V  V NY  P   EDYVHRIGRT
Sbjct:  276 LAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 347
[Close]
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RHLB_ECOUT (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain UTI89 / UPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 3 
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   G +V  + G  AQ +R + L  F  G   ++VATDVAARGL IP V  V NY  P   EDYVHRIGRT
Sbjct:  276 LAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 347
[Close]
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RHLB_ECOSM (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 3 
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   G +V  + G  AQ +R + L  F  G   ++VATDVAARGL IP V  V NY  P   EDYVHRIGRT
Sbjct:  276 LAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 347
[Close]
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RHLB_ECOSE (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain SE11) GN=rhlB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 3 
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   G +V  + G  AQ +R + L  F  G   ++VATDVAARGL IP V  V NY  P   EDYVHRIGRT
Sbjct:  276 LAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 347
[Close]
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RHLB_ECOLU (ATP-dependent RNA helicase rhlB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 3 
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   G +V  + G  AQ +R + L  F  G   ++VATDVAARGL IP V  V NY  P   EDYVHRIGRT
Sbjct:  276 LAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 347
[Close]
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RHLB_ECOLI (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain K12) GN=rhlB PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 3 
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   G +V  + G  AQ +R + L  F  G   ++VATDVAARGL IP V  V NY  P   EDYVHRIGRT
Sbjct:  276 LAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 347
[Close]
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RHLB_ECOLC (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rhlB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 3 
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   G +V  + G  AQ +R + L  F  G   ++VATDVAARGL IP V  V NY  P   EDYVHRIGRT
Sbjct:  276 LAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 347
[Close]
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RHLB_ECOL6 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O6 GN=rhlB PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 3 
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   G +V  + G  AQ +R + L  F  G   ++VATDVAARGL IP V  V NY  P   EDYVHRIGRT
Sbjct:  276 LAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 347
The following BLAST results are available for this feature:
BLAST of CX288877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_ESCF38.954e-1251.39ATP-dependent RNA helicase rhlB OS=Escherichia fer... [more]
RHLB_ERWT98.954e-1251.39ATP-dependent RNA helicase rhlB OS=Erwinia tasmani... [more]
RHLB_ENTS88.954e-1251.39ATP-dependent RNA helicase rhlB OS=Enterobacter sa... [more]
RHLB_ECOUT8.954e-1251.39ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOSM8.954e-1251.39ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOSE8.954e-1251.39ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOLU8.954e-1251.39ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOLI8.954e-1251.39ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOLC8.954e-1251.39ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOL68.954e-1251.39ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionC02006D10SK IF1 Citrus clementina cDNA clone C02006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288877 ID=CX288877; Name=CX288877; organism=Citrus clementina; type=EST; length=231bp
GTCTTGAAAATATGCTGCGGCGAAGTGGTTGGAAGGTCGCTGCAATACAT
GGTAAGAAAGCACAGCATGAACGTACAAAGTCACTGTCATTATTCAAGGA
GGGAACTTGTCCATTGATGGTTGCTACTGACGTTGCTGCTCGAGGATTGG
ATATTCCAGATGTTGAAGTAGTTATTAACTATTCTTTCCCTTTAACCACG
GAGGATTATGTTCACAGAATTGGTAGGACTG
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