CX288877

Overview
NameCX288877
Unique NameCX288877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length231
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RHLB_ECO55 (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain 55989 / EAEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 3
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   G +V  + G  AQ +R + L  F  G   ++VATDVAARGL IP V  V NY  P   EDYVHRIGRT
Sbjct:  276 LAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 347          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RHLB_ECO45 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 3
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   G +V  + G  AQ +R + L  F  G   ++VATDVAARGL IP V  V NY  P   EDYVHRIGRT
Sbjct:  276 LAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 347          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RHLB_ECO27 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 3
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   G +V  + G  AQ +R + L  F  G   ++VATDVAARGL IP V  V NY  P   EDYVHRIGRT
Sbjct:  276 LAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 347          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RHLB_ECO24 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 3
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   G +V  + G  AQ +R + L  F  G   ++VATDVAARGL IP V  V NY  P   EDYVHRIGRT
Sbjct:  276 LAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 347          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RHLB_CITK8 (ATP-dependent RNA helicase rhlB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rhlB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 3
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   G +V  + G  AQ +R + L  F  G   ++VATDVAARGL IP V  V NY  P   EDYVHRIGRT
Sbjct:  276 LAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 347          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: MS116_ASPOR (ATP-dependent RNA helicase mss116, mitochondrial OS=Aspergillus oryzae GN=mss116 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   33 KVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            KV  IH + +Q  RTK+ +LFKE    +M A+DV  RG+D P+V++VI    P   E YVHR+GRT
Sbjct:  378 KVFEIHSRLSQSARTKTTALFKEAATGIMFASDVIGRGMDFPNVDLVIQVGLPSNGEQYVHRVGRT 443          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + +R + + V+++HG   Q ER   ++ F+ GT  +++ TDV ARGLD+  V +VINY  P   E Y+HRIGR+
Sbjct:  273 LTSKMRENNFTVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRS 348          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   L +S + V ++HG   Q ER K ++ F+ G   ++++TDV ARG+D+  V +VINY  P   E+Y+HRIGR+
Sbjct:  281 LSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRS 356          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   L +S + V ++HG   Q ER K ++ F+ G   ++++TDV ARG+D+  V +VINY  P   E+Y+HRIGR+
Sbjct:  281 LSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRS 356          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 30/76 (39.47%), Postives = 50/76 (65.79%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   +R + + V+++HG+  Q ER   ++ F+ G   +++ TDV ARG+D+  V +VINY  P + E+Y+HRIGR+
Sbjct:  278 LTEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRS 353          
The following BLAST results are available for this feature:
BLAST of CX288877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_ECO558.954e-1251.39ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO458.954e-1251.39ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO278.954e-1251.39ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO248.954e-1251.39ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_CITK88.954e-1251.39ATP-dependent RNA helicase rhlB OS=Citrobacter kos... [more]
MS116_ASPOR8.954e-1248.48ATP-dependent RNA helicase mss116, mitochondrial O... [more]
IF4A3_NICPL8.954e-1242.11Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]
FAL1_YEAST8.954e-1242.11ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_YEAS78.954e-1242.11ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_CRYNE8.954e-1239.47ATP-dependent RNA helicase FAL1 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionC02006D10SK IF1 Citrus clementina cDNA clone C02006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288877 ID=CX288877; Name=CX288877; organism=Citrus clementina; type=EST; length=231bp
GTCTTGAAAATATGCTGCGGCGAAGTGGTTGGAAGGTCGCTGCAATACAT
GGTAAGAAAGCACAGCATGAACGTACAAAGTCACTGTCATTATTCAAGGA
GGGAACTTGTCCATTGATGGTTGCTACTGACGTTGCTGCTCGAGGATTGG
ATATTCCAGATGTTGAAGTAGTTATTAACTATTCTTTCCCTTTAACCACG
GAGGATTATGTTCACAGAATTGGTAGGACTG
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