CX288877

Overview
NameCX288877
Unique NameCX288877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length231
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_ENCCU (ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi GN=DBP2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.200e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            LE +L RSG+  AA+HG K+Q+ R K L  F+ G  P+++AT+VA RGLD+ DV++VIN+ FP + EDYVHRIGRT
Sbjct:  347 LEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRT 422          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_EMENI (ATP-dependent RNA helicase dbp2 OS=Emericella nidulans GN=dbp2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.200e-18
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   +IHG K Q ER   L+ FK G  P+MVATDVA+RG+D+ D+  VINY +P  +EDYVHRIGRT
Sbjct:  403 ITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRT 478          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_PICGU (ATP-dependent RNA helicase DED1 OS=Pichia guilliermondii GN=DED1 PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 2.874e-18
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L   G+   AIHG ++Q+ER K+L+ FK GT P++VAT VAARGLDIP+V  V+NY  P   +DYVHRIGRT
Sbjct:  442 LADFLYDQGFPATAIHGDRSQYEREKALAAFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRT 517          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_PHANO (ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum GN=DED1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.874e-18
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L   G+   +IHG + Q ER K+L +F+ G CP++VAT VAARGLDIP+V  V+NY  P   +DYVHRIGRT
Sbjct:  476 LSDFLINQGFPATSIHGDRTQREREKALEMFRSGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRT 551          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_DEBHA (ATP-dependent RNA helicase DED1 OS=Debaryomyces hansenii GN=DED1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.874e-18
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L   G+   AIHG ++Q+ER K+L+ FK GT P++VAT VAARGLDIP+V  ++NY  P   +DYVHRIGRT
Sbjct:  429 LADFLYDQGFPATAIHGDRSQYEREKALAAFKTGTAPILVATAVAARGLDIPNVSHIVNYDLPSDIDDYVHRIGRT 504          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.874e-18
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            + + LR  GW   AIHG KAQ+ER   L+ F+ G  P+MVATDVAARG+D+  +  VINY  P   EDYVHRIGRT
Sbjct:  376 ITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRT 451          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_COCIM (ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.874e-18
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   +IHG K Q+ER   L+ FK G  P+MVATDVA+RG+D+ D+  V+NY +P  +EDYVHRIGRT
Sbjct:  388 ITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRT 463          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_AJECN (ATP-dependent RNA helicase DBP2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.874e-18
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   +IHG K Q+ER   L+ FK G  P+MVATDVA+RG+D+ D+  V+NY +P  +EDYVHRIGRT
Sbjct:  389 ITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRT 464          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_ASPOR (ATP-dependent RNA helicase dbp2 OS=Aspergillus oryzae GN=dbp2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.753e-18
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   +IHG K Q ER   L+ FK G  P+MVATDVA+RG+D+ D+  V+NY +P  +EDYVHRIGRT
Sbjct:  393 ITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRT 468          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_ASPNC (ATP-dependent RNA helicase dbp2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.753e-18
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   +IHG K Q ER   L+ FK G  P+MVATDVA+RG+D+ D+  V+NY +P  +EDYVHRIGRT
Sbjct:  400 ITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRT 475          
The following BLAST results are available for this feature:
BLAST of CX288877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_ENCCU2.200e-1856.58ATP-dependent RNA helicase DBP2 OS=Encephalitozoon... [more]
DBP2_EMENI2.200e-1855.26ATP-dependent RNA helicase dbp2 OS=Emericella nidu... [more]
DED1_PICGU2.874e-1856.58ATP-dependent RNA helicase DED1 OS=Pichia guillier... [more]
DED1_PHANO2.874e-1853.95ATP-dependent RNA helicase DED1 OS=Phaeosphaeria n... [more]
DED1_DEBHA2.874e-1855.26ATP-dependent RNA helicase DED1 OS=Debaryomyces ha... [more]
DBP2_KLULA2.874e-1856.58ATP-dependent RNA helicase DBP2 OS=Kluyveromyces l... [more]
DBP2_COCIM2.874e-1853.95ATP-dependent RNA helicase DBP2 OS=Coccidioides im... [more]
DBP2_AJECN2.874e-1853.95ATP-dependent RNA helicase DBP2 OS=Ajellomyces cap... [more]
DBP2_ASPOR3.753e-1853.95ATP-dependent RNA helicase dbp2 OS=Aspergillus ory... [more]
DBP2_ASPNC3.753e-1853.95ATP-dependent RNA helicase dbp2 OS=Aspergillus nig... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02006D10SK IF1 Citrus clementina cDNA clone C02006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288877 ID=CX288877; Name=CX288877; organism=Citrus clementina; type=EST; length=231bp
GTCTTGAAAATATGCTGCGGCGAAGTGGTTGGAAGGTCGCTGCAATACAT
GGTAAGAAAGCACAGCATGAACGTACAAAGTCACTGTCATTATTCAAGGA
GGGAACTTGTCCATTGATGGTTGCTACTGACGTTGCTGCTCGAGGATTGG
ATATTCCAGATGTTGAAGTAGTTATTAACTATTCTTTCCCTTTAACCACG
GAGGATTATGTTCACAGAATTGGTAGGACTG
back to top