CX288877

Overview
NameCX288877
Unique NameCX288877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length231
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.753e-18
Identity = 47/74 (63.51%), Postives = 53/74 (71.62%), Query Frame = 3
Query:    9 NMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            N+ R  G   AAIHG K+Q ER   LS F+ G  P++VATDVAARGLDI D+ VVINY FP   EDYVHRIGRT
Sbjct:  409 NLTRNFG--AAAIHGDKSQGERDYVLSQFRAGRSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRT 480          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_NEOFI (ATP-dependent RNA helicase dbp2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.902e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   +IHG K Q ER   L+ FK G  P+MVATDVA+RG+D+ D+  V+NY +P  +EDY+HRIGRT
Sbjct:  382 ITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRT 457          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_ASPFU (ATP-dependent RNA helicase dbp2 OS=Aspergillus fumigatus GN=dbp2 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.902e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   +IHG K Q ER   L+ FK G  P+MVATDVA+RG+D+ D+  V+NY +P  +EDY+HRIGRT
Sbjct:  384 ITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRT 459          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_ASPCL (ATP-dependent RNA helicase dbp2 OS=Aspergillus clavatus GN=dbp2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.902e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   +IHG K Q ER   L+ FK G  P+MVATDVA+RG+D+ D+  V+NY +P  +EDY+HRIGRT
Sbjct:  388 ITRFLRQDGWPALSIHGDKQQQERDWVLNEFKAGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRT 463          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_PICST (ATP-dependent RNA helicase DED1 OS=Pichia stipitis GN=DED1 PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 6.402e-18
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L   G+   AIHG ++Q+ER K+L+ FK G  P++VAT VAARGLDIP+V  VINY  P   +DYVHRIGRT
Sbjct:  441 LADFLYDQGFPATAIHGDRSQYEREKALAAFKSGAAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRT 516          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_LODEL (ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus GN=DED1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.402e-18
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L   G+   AIHG ++Q+ER K+L+ FK G  P++VAT VAARGLDIP+V  VINY  P   +DYVHRIGRT
Sbjct:  448 LADFLYDQGFPATAIHGDRSQYEREKALAAFKSGQAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRT 523          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_CANAL (ATP-dependent RNA helicase DED1 OS=Candida albicans GN=DED1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.402e-18
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L   G+   AIHG ++Q+ER K+L+ FK G  P++VAT VAARGLDIP+V  VINY  P   +DYVHRIGRT
Sbjct:  459 LADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRT 534          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_CHAGB (ATP-dependent RNA helicase DED1 OS=Chaetomium globosum GN=DED1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.092e-17
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L    +   +IHG + Q ER ++L LF+ G CP++VAT VAARGLDIP+V  VINY  P   +DYVHRIGRT
Sbjct:  472 LSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRT 547          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_PICGU (ATP-dependent RNA helicase DBP2 OS=Pichia guilliermondii GN=DBP2 PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.092e-17
Identity = 43/76 (56.58%), Postives = 50/76 (65.79%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            + + LR  GW   AIHG K Q+ER   L  FK G  P+MVATDVAARG+D+  +  VINY  P   EDYVHRIGRT
Sbjct:  388 ITSYLRADGWPALAIHGDKQQNERDWVLREFKTGKSPIMVATDVAARGIDVKGISYVINYDMPGNIEDYVHRIGRT 463          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            LEN L  +G+   +IHG + Q ER  +L  FK G  P++VATDVAARGLDIP V  VIN+  P   +DYVHRIGRT
Sbjct:  444 LENWLYNNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRT 519          
The following BLAST results are available for this feature:
BLAST of CX288877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DB10_NICSY3.753e-1863.51ATP-dependent RNA helicase-like protein DB10 OS=Ni... [more]
DBP2_NEOFI4.902e-1852.63ATP-dependent RNA helicase dbp2 OS=Neosartorya fis... [more]
DBP2_ASPFU4.902e-1852.63ATP-dependent RNA helicase dbp2 OS=Aspergillus fum... [more]
DBP2_ASPCL4.902e-1852.63ATP-dependent RNA helicase dbp2 OS=Aspergillus cla... [more]
DED1_PICST6.402e-1856.58ATP-dependent RNA helicase DED1 OS=Pichia stipitis... [more]
DED1_LODEL6.402e-1856.58ATP-dependent RNA helicase DED1 OS=Lodderomyces el... [more]
DED1_CANAL6.402e-1856.58ATP-dependent RNA helicase DED1 OS=Candida albican... [more]
DED1_CHAGB1.092e-1753.95ATP-dependent RNA helicase DED1 OS=Chaetomium glob... [more]
DBP2_PICGU1.092e-1756.58ATP-dependent RNA helicase DBP2 OS=Pichia guillier... [more]
RH52B_ORYSJ1.426e-1756.58DEAD-box ATP-dependent RNA helicase 52B OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionC02006D10SK IF1 Citrus clementina cDNA clone C02006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288877 ID=CX288877; Name=CX288877; organism=Citrus clementina; type=EST; length=231bp
GTCTTGAAAATATGCTGCGGCGAAGTGGTTGGAAGGTCGCTGCAATACAT
GGTAAGAAAGCACAGCATGAACGTACAAAGTCACTGTCATTATTCAAGGA
GGGAACTTGTCCATTGATGGTTGCTACTGACGTTGCTGCTCGAGGATTGG
ATATTCCAGATGTTGAAGTAGTTATTAACTATTCTTTCCCTTTAACCACG
GAGGATTATGTTCACAGAATTGGTAGGACTG
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