CX288877

Overview
NameCX288877
Unique NameCX288877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length231
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17
Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = 3
Query:    9 NMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            N+ R  G   AAIHG K+Q ER   L+ F+ G  P++VATDVAARGLD+ D+ VV+NY FP   EDYVHRIGRT
Sbjct:  425 NLTRTFG--AAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRT 496          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_NEOFI (ATP-dependent RNA helicase ded1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ded1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L    +   AIHG + Q ER ++L +F+ G CP++VAT VAARGLDIP+V  VINY  P   +DYVHRIGRT
Sbjct:  468 LSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRT 543          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_ASPOR (ATP-dependent RNA helicase ded1 OS=Aspergillus oryzae GN=ded1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L    +   AIHG + Q ER ++L +F+ G CP++VAT VAARGLDIP+V  VINY  P   +DYVHRIGRT
Sbjct:  464 LSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRT 539          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_ASPNC (ATP-dependent RNA helicase ded1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ded1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L    +   AIHG + Q ER ++L +F+ G CP++VAT VAARGLDIP+V  VINY  P   +DYVHRIGRT
Sbjct:  465 LSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRT 540          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_ASPFU (ATP-dependent RNA helicase ded1 OS=Aspergillus fumigatus GN=ded1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L    +   AIHG + Q ER ++L +F+ G CP++VAT VAARGLDIP+V  VINY  P   +DYVHRIGRT
Sbjct:  466 LSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRT 541          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_NEUCR (ATP-dependent RNA helicase dbp-2 OS=Neurospora crassa GN=dbp-2 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   +IHG K Q+ER   L  FK G  P+MVATDVA+RG+D+ ++  V+NY +P  +EDY+HRIGRT
Sbjct:  397 ITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRT 472          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_MAGGR (ATP-dependent RNA helicase DBP2 OS=Magnaporthe grisea GN=DBP2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   +IHG K Q+ER   L  FK G  P+MVATDVA+RG+D+ ++  V+NY +P  +EDY+HRIGRT
Sbjct:  390 ITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRT 465          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   +IHG K Q+ER   L  FK G  P+MVATDVA+RG+D+ ++  V+NY +P  +EDY+HRIGRT
Sbjct:  397 ITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRT 472          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_CHAGB (ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum GN=DBP2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   +IHG K Q+ER   L  FK G  P+MVATDVA+RG+D+ ++  V+NY +P  +EDY+HRIGRT
Sbjct:  401 ITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRT 476          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_CANGA (ATP-dependent RNA helicase DBP2 OS=Candida glabrata GN=DBP2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17
Identity = 41/76 (53.95%), Postives = 51/76 (67.11%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            + + LR+ GW   AIHG K Q ER   L+ F+ G  P+MVATDVAARG+D+  +  V+NY  P   EDYVHRIGRT
Sbjct:  373 ITSYLRQDGWPALAIHGDKDQRERDWVLNEFRTGNSPIMVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRT 448          
The following BLAST results are available for this feature:
BLAST of CX288877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH46_ARATH1.426e-1759.46DEAD-box ATP-dependent RNA helicase 46 OS=Arabidop... [more]
DED1_NEOFI1.426e-1753.95ATP-dependent RNA helicase ded1 OS=Neosartorya fis... [more]
DED1_ASPOR1.426e-1753.95ATP-dependent RNA helicase ded1 OS=Aspergillus ory... [more]
DED1_ASPNC1.426e-1753.95ATP-dependent RNA helicase ded1 OS=Aspergillus nig... [more]
DED1_ASPFU1.426e-1753.95ATP-dependent RNA helicase ded1 OS=Aspergillus fum... [more]
DBP2_NEUCR1.426e-1751.32ATP-dependent RNA helicase dbp-2 OS=Neurospora cra... [more]
DBP2_MAGGR1.426e-1751.32ATP-dependent RNA helicase DBP2 OS=Magnaporthe gri... [more]
DBP2_GIBZE1.426e-1751.32ATP-dependent RNA helicase DBP2 OS=Gibberella zeae... [more]
DBP2_CHAGB1.426e-1751.32ATP-dependent RNA helicase DBP2 OS=Chaetomium glob... [more]
DBP2_CANGA1.426e-1753.95ATP-dependent RNA helicase DBP2 OS=Candida glabrat... [more]

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Properties
Property NameValue
Genbank descriptionC02006D10SK IF1 Citrus clementina cDNA clone C02006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288877 ID=CX288877; Name=CX288877; organism=Citrus clementina; type=EST; length=231bp
GTCTTGAAAATATGCTGCGGCGAAGTGGTTGGAAGGTCGCTGCAATACAT
GGTAAGAAAGCACAGCATGAACGTACAAAGTCACTGTCATTATTCAAGGA
GGGAACTTGTCCATTGATGGTTGCTACTGACGTTGCTGCTCGAGGATTGG
ATATTCCAGATGTTGAAGTAGTTATTAACTATTCTTTCCCTTTAACCACG
GAGGATTATGTTCACAGAATTGGTAGGACTG
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