CX288877

Overview
NameCX288877
Unique NameCX288877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length231
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.863e-17
Identity = 43/76 (56.58%), Postives = 51/76 (67.11%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   L   G+   AIHG + Q ER  +L  FK G  P+MVATDVA+RGLD+P+V  VINY  P + EDYVHRIGRT
Sbjct:  367 LRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRT 442          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.863e-17
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            LEN L  +G+   +IHG + Q ER  +L  FK G  P++VATDVAARGLDIP V  VIN+  P   +DYVHRIGRT
Sbjct:  449 LENWLYTNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRT 524          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.863e-17
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 3
Query:    9 NMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            N+ R+ G   AAIHG K+Q ER   L+ F+ G  P++VATDVAARGLD+ D+  V+NY FP   EDYVHRIGRT
Sbjct:  422 NLTRQFG--AAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRT 493          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_BOTFB (ATP-dependent RNA helicase ded1 OS=Botryotinia fuckeliana (strain B05.10) GN=ded1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.863e-17
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L    +   +IHG + Q ER ++L +F+ G CP++VAT VAARGLDIP+V+ V+NY  P   +DYVHRIGRT
Sbjct:  461 LSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRT 536          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_NEUCR (ATP-dependent RNA helicase ded-1 OS=Neurospora crassa GN=ded-1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.433e-17
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L    +   +IHG + Q ER ++L +F+ G CP++VAT VAARGLDIP+V  VINY  P   +DYVHRIGRT
Sbjct:  469 LSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRT 544          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_MAGGR (ATP-dependent RNA helicase DED1 OS=Magnaporthe grisea GN=DED1 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.433e-17
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L+       +IHG + Q ER ++L +F+ G CP++VAT VAARGLDIP+V  VINY  P   +DYVHRIGRT
Sbjct:  465 LSDFLQNQNLPATSIHGDRTQRERERALEMFRTGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRT 540          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP8_LODEL (ATP-dependent RNA helicase DBP8 OS=Lodderomyces elongisporus GN=DBP8 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.433e-17
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L  MLR+  +KVA++H +  Q ERT SL  FK G   +++ATDVA+RGLDIP VE+V+N+  P   +D++HR+GRT
Sbjct:  272 LRRMLRKLEFKVASLHSEMPQTERTNSLHRFKAGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRT 347          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP8_CANAL (ATP-dependent RNA helicase DBP8 OS=Candida albicans GN=DBP8 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.433e-17
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L  MLR+  ++VA++H +  Q ERT SL  FK G   +++ATDVA+RGLDIP VE+VIN+  P   +D++HR+GRT
Sbjct:  269 LRRMLRKLDFRVASLHSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRT 344          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.433e-17
Identity = 42/72 (58.33%), Postives = 47/72 (65.28%), Query Frame = 3
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            LR  GW   AIHG K Q ER   L  F+ G  P+MVATDVAARG+D+  +  VINY  P   EDYVHRIGRT
Sbjct:  380 LREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRT 451          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.433e-17
Identity = 42/72 (58.33%), Postives = 47/72 (65.28%), Query Frame = 3
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            LR  GW   AIHG K Q ER   L  F+ G  P+MVATDVAARG+D+  +  VINY  P   EDYVHRIGRT
Sbjct:  380 LREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRT 451          
The following BLAST results are available for this feature:
BLAST of CX288877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH52A_ORYSJ1.863e-1756.58DEAD-box ATP-dependent RNA helicase 52A OS=Oryza s... [more]
RH37_ORYSJ1.863e-1756.58DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sa... [more]
RH14_ARATH1.863e-1758.11DEAD-box ATP-dependent RNA helicase 14 OS=Arabidop... [more]
DED1_BOTFB1.863e-1751.32ATP-dependent RNA helicase ded1 OS=Botryotinia fuc... [more]
DED1_NEUCR2.433e-1752.63ATP-dependent RNA helicase ded-1 OS=Neurospora cra... [more]
DED1_MAGGR2.433e-1752.63ATP-dependent RNA helicase DED1 OS=Magnaporthe gri... [more]
DBP8_LODEL2.433e-1751.32ATP-dependent RNA helicase DBP8 OS=Lodderomyces el... [more]
DBP8_CANAL2.433e-1751.32ATP-dependent RNA helicase DBP8 OS=Candida albican... [more]
DBP2_YEAST2.433e-1758.33ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
DBP2_YEAS72.433e-1758.33ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionC02006D10SK IF1 Citrus clementina cDNA clone C02006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288877 ID=CX288877; Name=CX288877; organism=Citrus clementina; type=EST; length=231bp
GTCTTGAAAATATGCTGCGGCGAAGTGGTTGGAAGGTCGCTGCAATACAT
GGTAAGAAAGCACAGCATGAACGTACAAAGTCACTGTCATTATTCAAGGA
GGGAACTTGTCCATTGATGGTTGCTACTGACGTTGCTGCTCGAGGATTGG
ATATTCCAGATGTTGAAGTAGTTATTAACTATTCTTTCCCTTTAACCACG
GAGGATTATGTTCACAGAATTGGTAGGACTG
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