CX288877

Overview
NameCX288877
Unique NameCX288877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length231
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_SCLS1 (ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.433e-17
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   +IHG K Q+ER   L+ FK G  P+MVATDVA+RG+D+ ++  V NY +P  +EDY+HRIGRT
Sbjct:  412 ITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRT 487          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_BOTFB (ATP-dependent RNA helicase dbp2 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp2 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.433e-17
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +   LR+ GW   +IHG K Q+ER   L+ FK G  P+MVATDVA+RG+D+ ++  V NY +P  +EDY+HRIGRT
Sbjct:  365 ITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRT 440          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_SCLS1 (ATP-dependent RNA helicase ded1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=ded1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.177e-17
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L    +   +IHG + Q ER ++L +F+ G CP++VAT VAARGLDIP+V  V+NY  P   +DYVHRIGRT
Sbjct:  461 LSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRT 536          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH37_ARATH (DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.149e-17
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            LEN L  +G+   +IHG + Q ER  +L  FK G  P++VATDVAARGLDIP V  V+N+  P   +DYVHRIGRT
Sbjct:  434 LENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRT 509          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_COCIM (ATP-dependent RNA helicase DED1 OS=Coccidioides immitis GN=DED1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.149e-17
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   L    +   AIHG + Q ER ++L  F+ G CP++VAT VAARGLDIP+V  V+NY  P   +DYVHRIGRT
Sbjct:  452 LSEFLINQNFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRT 527          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_LODEL (ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus GN=DBP2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.149e-17
Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   15 LRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            LR  GW   AIHG K QHER   L  F++G+  +MVATDVAARG+D+  +  V+NY  P   EDYVHRIGRT
Sbjct:  383 LRADGWPALAIHGDKEQHERDWVLKEFRQGSHSIMVATDVAARGIDVKGITHVVNYDMPGNIEDYVHRIGRT 454          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP2_DEBHA (ATP-dependent RNA helicase DBP2 OS=Debaryomyces hansenii GN=DBP2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.149e-17
Identity = 43/76 (56.58%), Postives = 48/76 (63.16%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            + N LR  GW   AIHG K Q ER   L  FK G  P+MVATDVAARG+D+  +  VIN   P   EDYVHRIGRT
Sbjct:  368 ITNYLRADGWPALAIHGDKQQGERDWVLKEFKTGKSPIMVATDVAARGIDVKGISYVINLDMPGNIEDYVHRIGRT 443          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_USTMA (ATP-dependent RNA helicase DED1 OS=Ustilago maydis GN=DED1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.419e-17
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L RS     +IHG + Q ER ++L LF+ G  P+MVAT VAARGLDIP+V  V+NY  P   +DYVHRIGRT
Sbjct:  466 LSDFLLRSKIGATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRT 541          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DED1_GIBZE (ATP-dependent RNA helicase DED1 OS=Gibberella zeae GN=DED1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.419e-17
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L + L    +   +IHG + Q ER ++L  F+ G CP++VAT VAARGLDIP V  VINY  P   +DYVHRIGRT
Sbjct:  461 LSDFLINQNFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARGLDIPHVTHVINYDLPTDVDDYVHRIGRT 536          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP8_DEBHA (ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii GN=DBP8 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.419e-17
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            L   LR+  ++VA++H +  Q ERT SL  FK G   +++ATDVA+RGLDIP VE+V+NY  P   +D++HR+GRT
Sbjct:  269 LRRTLRKLEFRVASLHSEMPQTERTNSLHRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRT 344          
The following BLAST results are available for this feature:
BLAST of CX288877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_SCLS12.433e-1751.32ATP-dependent RNA helicase dbp2 OS=Sclerotinia scl... [more]
DBP2_BOTFB2.433e-1751.32ATP-dependent RNA helicase dbp2 OS=Botryotinia fuc... [more]
DED1_SCLS13.177e-1751.32ATP-dependent RNA helicase ded1 OS=Sclerotinia scl... [more]
RH37_ARATH4.149e-1755.26DEAD-box ATP-dependent RNA helicase 37 OS=Arabidop... [more]
DED1_COCIM4.149e-1752.63ATP-dependent RNA helicase DED1 OS=Coccidioides im... [more]
DBP2_LODEL4.149e-1756.94ATP-dependent RNA helicase DBP2 OS=Lodderomyces el... [more]
DBP2_DEBHA4.149e-1756.58ATP-dependent RNA helicase DBP2 OS=Debaryomyces ha... [more]
DED1_USTMA5.419e-1755.26ATP-dependent RNA helicase DED1 OS=Ustilago maydis... [more]
DED1_GIBZE5.419e-1752.63ATP-dependent RNA helicase DED1 OS=Gibberella zeae... [more]
DBP8_DEBHA5.419e-1750.00ATP-dependent RNA helicase DBP8 OS=Debaryomyces ha... [more]

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Properties
Property NameValue
Genbank descriptionC02006D10SK IF1 Citrus clementina cDNA clone C02006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288877 ID=CX288877; Name=CX288877; organism=Citrus clementina; type=EST; length=231bp
GTCTTGAAAATATGCTGCGGCGAAGTGGTTGGAAGGTCGCTGCAATACAT
GGTAAGAAAGCACAGCATGAACGTACAAAGTCACTGTCATTATTCAAGGA
GGGAACTTGTCCATTGATGGTTGCTACTGACGTTGCTGCTCGAGGATTGG
ATATTCCAGATGTTGAAGTAGTTATTAACTATTCTTTCCCTTTAACCACG
GAGGATTATGTTCACAGAATTGGTAGGACTG
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