CX288909

Overview
NameCX288909
Unique NameCX288909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 294.278 bits (752), Expect = 2.484e-79
Identity = 145/178 (81.46%), Postives = 157/178 (88.20%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI  +  + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L
Sbjct:   76 TSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVL 251
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_MESAU (Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3)

HSP 1 Score: 294.278 bits (752), Expect = 2.484e-79
Identity = 145/178 (81.46%), Postives = 157/178 (88.20%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI  +  + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L
Sbjct:   76 TSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVL 251
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_HUMAN (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3)

HSP 1 Score: 294.278 bits (752), Expect = 2.484e-79
Identity = 145/178 (81.46%), Postives = 157/178 (88.20%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI  +  + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L
Sbjct:   76 TSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVL 251
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_BOVIN (Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 294.278 bits (752), Expect = 2.484e-79
Identity = 145/178 (81.46%), Postives = 157/178 (88.20%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI  +  + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L
Sbjct:   76 TSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVL 251
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_DICDI (Eukaryotic peptide chain release factor subunit 1 OS=Dictyostelium discoideum GN=erf1 PE=2 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 3.357e-76
Identity = 141/178 (79.21%), Postives = 153/178 (85.96%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TSAQQRLKLY KVP NGLV+Y GT+VTD+GKEK V ID EPFKPIN SLYLCDNKFHT  L ELLESD+KFGFIV+DGNG LFG L G+TR VLHK TVDLPKKHGRGGQSALRFARLRMEKRHNYVRK +ELATQF++     +PNVSGLILAGSADFKTEL  SDMFD RL+ KI+
Sbjct:   78 TSAQQRLKLYTKVPDNGLVIYCGTMVTDEGKEKPVRIDIEPFKPINTSLYLCDNKFHTAPLGELLESDEKFGFIVVDGNGALFGLLCGSTRTVLHKITVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVSELATQFYV--TNDKPNVSGLILAGSADFKTELGTSDMFDQRLREKII 253
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_PODAN (Eukaryotic peptide chain release factor subunit 1 OS=Podospora anserina GN=SU2 PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 1.666e-75
Identity = 137/178 (76.97%), Postives = 153/178 (85.96%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS QQRLKLYNKVPPNGLV+Y G ++T +GKE+KV IDFEPFKPIN SLYLCDNKFHTEAL ELLESD KFGFIVMDGNG LFGTLSGNTR+++HKF+VDLPKKHGRGGQSALRFARLR EKRHNYVRK AELA Q FI     + NV G++LAGSADFK +L+ SDMFD RL  K++
Sbjct:   77 TSTQQRLKLYNKVPPNGLVVYCGEILTSEGKERKVNIDFEPFKPINTSLYLCDNKFHTEALAELLESDQKFGFIVMDGNGALFGTLSGNTRDIVHKFSVDLPKKHGRGGQSALRFARLREEKRHNYVRKVAELAVQNFI--TNDKVNVMGIVLAGSADFKNDLNASDMFDQRLATKVI 252
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_CAEEL (Eukaryotic peptide chain release factor subunit 1 OS=Caenorhabditis elegans GN=erf-1 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 6.331e-75
Identity = 139/178 (78.09%), Postives = 152/178 (85.39%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS Q RLKLYNKVPPNGLV+Y GT++TD+GKEKKV IDFEPFK IN SLYLCDNKFHTEAL  LL  D+KFGFI+MDGNG LFGTL GNTREVLHKFTVDLPKKHGRGGQSA+RFARLR EKRHNYVRK AE + + FI     +  V+GLILAGSADFKTEL QSDMFD RLQAK++
Sbjct:   84 TSVQGRLKLYNKVPPNGLVVYCGTIMTDEGKEKKVNIDFEPFKAINTSLYLCDNKFHTEALQGLLADDNKFGFIIMDGNGCLFGTLQGNTREVLHKFTVDLPKKHGRGGQSAVRFARLRNEKRHNYVRKVAENSVEQFIK--NDKVTVAGLILAGSADFKTELGQSDMFDQRLQAKMI 259
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_YEAST (Eukaryotic peptide chain release factor subunit 1 OS=Saccharomyces cerevisiae GN=SUP1 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.842e-74
Identity = 134/178 (75.28%), Postives = 154/178 (86.52%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS QQ+LKLYN +P NGLVLY G ++T+DGKEKKVT D EP+KPIN SLYLCDNKFHTE L+ELL++DDKFGFIVMDG GTLFG++SGNTR VLHKFTVDLPKKHGRGGQSALRFARLR EKRHNYVRK AE+A Q FI     + NV GLILAGSADFKT+L++S++FDPRL  K++
Sbjct:   73 TSTQQKLKLYNTLPKNGLVLYCGDIITEDGKEKKVTFDIEPYKPINTSLYLCDNKFHTEVLSELLQADDKFGFIVMDGQGTLFGSVSGNTRTVLHKFTVDLPKKHGRGGQSALRFARLREEKRHNYVRKVAEVAVQNFI--TNDKVNVKGLILAGSADFKTDLAKSELFDPRLACKVI 248
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_CRYHO (Eukaryotic peptide chain release factor subunit 1 OS=Cryptosporidium hominis GN=erf1 PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 2.252e-72
Identity = 132/178 (74.16%), Postives = 151/178 (84.83%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS QQRLKLYN+ P NGLV+Y GT++T+DGKEKKV IDFEPFKPIN SLYLCDNKFH +AL ELLE+DDKFGFI++DGNG L+G + G++REVL +F VDLPKKHGRGGQSALRFARLRMEKRHNY+RK AE AT  FI     Q NV+ LILAGSADFK EL+QSD+FD RL +KIL
Sbjct:   72 TSTQQRLKLYNRTPQNGLVVYCGTLITEDGKEKKVNIDFEPFKPINTSLYLCDNKFHVDALKELLETDDKFGFIIVDGNGALYGVVQGSSREVLLRFNVDLPKKHGRGGQSALRFARLRMEKRHNYLRKVAETATTMFI--TNDQVNVAALILAGSADFKNELAQSDIFDQRLASKIL 247
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_SCHPO (Eukaryotic peptide chain release factor subunit 1 OS=Schizosaccharomyces pombe GN=sup45 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 2.330e-69
Identity = 128/178 (71.91%), Postives = 149/178 (83.71%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS ++RLKLYNKVP NGLV+Y G V+ +  K +K+ IDFEPFKPIN S YLCDNKFHTEAL ELLESD +FGFIVMDG+ TL+G +SG+ REVL +FTVDLPKKHGRGGQSALRFARLR EKRHNYVRK AE A Q FI     +PNV+G++LAGSADFKTEL QSD+FD RLQ++I+
Sbjct:   73 TSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGSAREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFI--TDDKPNVAGIVLAGSADFKTELGQSDLFDQRLQSRII 248
The following BLAST results are available for this feature:
BLAST of CX288909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_MOUSE2.484e-7981.46Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MESAU2.484e-7981.46Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_HUMAN2.484e-7981.46Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BOVIN2.484e-7981.46Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DICDI3.357e-7679.21Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PODAN1.666e-7576.97Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CAEEL6.331e-7578.09Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_YEAST1.842e-7475.28Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CRYHO2.252e-7274.16Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_SCHPO2.330e-6971.91Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC02006G09SK IF1 Citrus clementina cDNA clone C02006G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288909 ID=CX288909; Name=CX288909; organism=Citrus clementina; type=EST; length=535bp
ACTTCTGCTCAGCAGAGGCTGAAGCTATATAACAAGGTTCCTCCCAATGG
GTTGGTGCTTTATACTGGAACAGTTGTTACTGACGACGGCAAGGAAAAGA
AAGTGACAATTGACTTTGAGCCTTTCAAGCCTATAAATGCATCGTTGTAT
CTCTGTGATAACAAGTTTCACACTGAAGCCTTGAATGAACTCTTAGAATC
TGATGACAAATTTGGGTTTATTGTCATGGATGGAAATGGCACCCTATTTG
GCACATTAAGTGGAAACACAAGAGAGGTGCTTCATAAGTTTACTGTTGAT
CTGCCGAAGAAGCATGGAAGAGGAGGGCAGTCAGCTCTTCGCTTTGCTCG
TCTTCGGATGGAGAAACGGCACAACTATGTGAGGAAGACAGCAGAGCTTG
CTACACAGTTCTTTATCAATCCTGCTACCAGTCAGCCCAATGTGTCTGGG
TTAATTCTTGCTGGTTCTGCTGATTTCAAAACTGAGCTGAGCCAGTCTGA
TATGTTTGATCCTCGTTTACAAGCCAAGATATTGA
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