CX288909

Overview
NameCX288909
Unique NameCX288909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: RF1_METST (Peptide chain release factor subunit 1 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=prf1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.865e-17
Identity = 48/175 (27.43%), Postives = 85/175 (48.57%), Query Frame = 1
Query:   13 QRLKLYNKVPPNGLVLYTGTVVTDD-GKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            QRLKL+ K P  GLV++ G +     G EK  T  F+P + +    Y CD++F  E L +++E  + +G +V+D   +   TL G   +++   T  +P KH  GGQS  RF R+     H ++++      + F+     +  + G+++ G    K +    +     +  KI+
Sbjct:   75 QRLKLFPKPPEKGLVMFVGMIPKGGPGTEKMETYVFQPPEAVQTYTYHCDSQFFVEPLKQIIEYKEVYGVVVLDRKESTIATLRGKRIDIIKHLTSGVPGKHKAGGQSQRRFDRVIELAAHEFLKRIGRHVDEAFL---PLKDELKGVLIGGPGHTKNDFVDGEYIHYEIHDKII 246          
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: RF1_AERPE (Peptide chain release factor subunit 1 OS=Aeropyrum pernix GN=prf1 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 7.865e-17
Identity = 56/178 (31.46%), Postives = 89/178 (50.00%), Query Frame = 1
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            ++A  RL++    PPNGLVL+ G    D    K     F P +PI    Y  D +F T+ L +++E ++  G I+++ +    G L G   EVL +    +P KH  GGQS  R+ R+  +    + +K  E A+   + P   +  + G+I+AG    K E  + +  D RL+ KIL
Sbjct:   76 SAAMDRLQMLTSTPPNGLVLFCGE---DMSTGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNNAIGIIIVERDQATIGLLKGARLEVLKELEGFVPGKHKMGGQSQRRYERIIEQMVDEFFKKVGEEASNLLV-PLAEKGVLKGVIVAGPGLAKQEFVEGNYLDYRLK-KIL 248          
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: RF1_SULSO (Peptide chain release factor subunit 1 OS=Sulfolobus solfataricus GN=prf1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.615e-15
Identity = 53/178 (29.78%), Postives = 84/178 (47.19%), Query Frame = 1
Query:    4 SAQQRLKLYNKVPPNGLVLYTG-TVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            +A  RL    K+  NGLVL+ G    T+D K       F P   +    Y  D +FH E L +++E    +G I+++ +    G L G   E+L +    +P KH  GGQS  R  R+  E  HN++++  E    +F+ P      + G++L G    K +  + D  D R++  IL
Sbjct:   73 AAIDRLNKIPKIDGNGLVLFCGENFDTEDFK----CFMFSPPDKVPLFFYRTDKEFHLEFLEDMVEDTAVYGLIIVERDEATIGLLKGARIEILEEIEGFVPGKHMMGGQSQRRIDRIIDEMYHNFLKEVGEKVNAYFM-PFVQNGKMKGVLLGGPGYAKEDFYKEDYVDYRIKNLIL 245          
The following BLAST results are available for this feature:
BLAST of CX288909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RF1_METST7.865e-1727.43Peptide chain release factor subunit 1 OS=Methanos... [more]
RF1_AERPE7.865e-1731.46Peptide chain release factor subunit 1 OS=Aeropyru... [more]
RF1_SULSO9.615e-1529.78Peptide chain release factor subunit 1 OS=Sulfolob... [more]

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Properties
Property NameValue
Genbank descriptionC02006G09SK IF1 Citrus clementina cDNA clone C02006G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288909 ID=CX288909; Name=CX288909; organism=Citrus clementina; type=EST; length=535bp
ACTTCTGCTCAGCAGAGGCTGAAGCTATATAACAAGGTTCCTCCCAATGG
GTTGGTGCTTTATACTGGAACAGTTGTTACTGACGACGGCAAGGAAAAGA
AAGTGACAATTGACTTTGAGCCTTTCAAGCCTATAAATGCATCGTTGTAT
CTCTGTGATAACAAGTTTCACACTGAAGCCTTGAATGAACTCTTAGAATC
TGATGACAAATTTGGGTTTATTGTCATGGATGGAAATGGCACCCTATTTG
GCACATTAAGTGGAAACACAAGAGAGGTGCTTCATAAGTTTACTGTTGAT
CTGCCGAAGAAGCATGGAAGAGGAGGGCAGTCAGCTCTTCGCTTTGCTCG
TCTTCGGATGGAGAAACGGCACAACTATGTGAGGAAGACAGCAGAGCTTG
CTACACAGTTCTTTATCAATCCTGCTACCAGTCAGCCCAATGTGTCTGGG
TTAATTCTTGCTGGTTCTGCTGATTTCAAAACTGAGCTGAGCCAGTCTGA
TATGTTTGATCCTCGTTTACAAGCCAAGATATTGA
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