CX288920

Overview
NameCX288920
Unique NameCX288920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.088e-12
Identity = 38/102 (37.25%), Postives = 50/102 (49.02%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            F +    RN       GF+ Y +FI A   +   GFGTTG    + +EI AFLA    +T+ G+  A  GP AWG CY  E     +YC  S +  +PC  G
Sbjct:   74 FNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFP--GFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQ--WPCAAG 171          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.454e-11
Identity = 37/103 (35.92%), Postives = 51/103 (49.51%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVG-FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            F+   + RN         F+ Y +F+TA   +   GFGTTG    + +EI AFLA    +T+ G+  A  GP AWG C+  E      YC  S +  +PC PG
Sbjct:   81 FDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFP--GFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQ--WPCAPG 179          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.454e-11
Identity = 39/104 (37.50%), Postives = 54/104 (51.92%), Query Frame = 2
Query:  251 ISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKY 562
            +SD     +F+     RN     A GF+ Y +FI+A  ++    FG TG  L + +EI AFL     +T+ G+  A  GP AWG CY  E++  Q YCD S  Y
Sbjct:   89 LSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPD--FGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNY 189          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.511e-11
Identity = 37/103 (35.92%), Postives = 51/103 (49.51%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVG-FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            F+   + RN       G F+ Y +FI+A   +   GFGTTG    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S +  +PC PG
Sbjct:   75 FDQMLNHRNDNACQGKGNFYSYNAFISAAGSFP--GFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQ--WPCAPG 173          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.511e-11
Identity = 37/103 (35.92%), Postives = 51/103 (49.51%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVG-FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            F+   + RN       G F+ Y +FI+A   +   GFGTTG    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S +  +PC PG
Sbjct:   77 FDQMLNHRNDNACQGKGNFYSYNAFISAAGSFP--GFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQ--WPCAPG 175          
The following BLAST results are available for this feature:
BLAST of CX288920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CHIB_VITVI9.088e-1237.25Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIC_SOLLC3.454e-1135.92Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI6_POPTR3.454e-1137.50Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI2_SOLTU4.511e-1135.92Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_SOLTU4.511e-1135.92Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC02006H10SK IF1 Citrus clementina cDNA clone C02006H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288920 ID=CX288920; Name=CX288920; organism=Citrus clementina; type=EST; length=585bp
TCCCATTTCTCTCATCTTCCCCCAAGTGAATCTCGAAACAACAGGTAGAT
CTGGTGAGAACGAGAAAATGAAGATGAAGAATGGCAGTGTGGCAATAACA
CTGACAGTGGCACTAGTACTGGCACTGGCAGTGAGTTTGGCAAATGGAGA
TGAATCAGAGAAGGTGATAGTGAAGAAGGTGAAGGGGAAAAAAGTTTGCA
TAAAAGGGTGGGAGTGCCCAACATGGTCGAAATTCTGCTGTAACGAGACG
ATATCAGACTATTTCCAGGTTTACCAGTTTGAGAATTTCTTCTCGAAAAG
GAACACGCCGGTGGCACATGCCGTGGGATTCTGGGATTATCAGTCTTTCA
TTACTGCCACCGTCAAATATCAGCCCCTCGGCTTCGGTACCACCGGTACT
AAGCTTGATAAGATGAAGGAGATTTGCGCTTTTCTTGCCCACGTGGGCTG
CAAGACCTCTTGTGGATATGGAGTGGCCACTGGAGGACCATTGGCCTGGG
GACTTTGCTACAACCATGAAATGAGCCCCAGTCAGTCATATTGTGATGAT
TCCTACAAATACACATATCCCTGCACCCCTGGAGC
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