CX288921

Overview
NameCX288921
Unique NameCX288921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX3_ARATH (Probable glutathione peroxidase 3, mitochondrial OS=Arabidopsis thaliana GN=GPX3 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.156e-58
Identity = 105/162 (64.81%), Postives = 122/162 (75.31%), Query Frame = 2
Query:   50 FFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 535
            F++ R          +  S+Y+ +VKDI+GKDV LSKF GKVLLIVNVAS+CGLT  NY E++ LY KYKTQGFEILAFPCNQFG QEPGSN EIKE  C  FKAEFPIFDK++VNG NT P+Y FLK   GG  GD +KWNF KFLVD+ G V++RY PTT
Sbjct:   29 FYLYRYPSSPSTVEQSSTSIYNISVKDIEGKDVSLSKFTGKVLLIVNVASKCGLTHGNYKEMNILYAKYKTQGFEILAFPCNQFGSQEPGSNMEIKETVCNIFKAEFPIFDKIEVNGKNTCPLYNFLKEQKGGLFGDAIKWNFAKFLVDRQGNVVDRYAPTT 190          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 5.384e-58
Identity = 105/146 (71.92%), Postives = 122/146 (83.56%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 535
            +S+YDFTVKD  G DV LS +KGKVL+IVNVAS+CGLT SNY++L+ +Y+KYK QG EILAFPCNQFGGQEPGS  E I+   CTRFKAE+PIFDKVDVNG N AP+Y+FLKSS GGF GD +KWNF KFLVDK G V++RY PTT
Sbjct:    9 QSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEESIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTT 154          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX4_HELAN (Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus GN=GPXHA-2 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 9.184e-58
Identity = 103/140 (73.57%), Postives = 120/140 (85.71%), Query Frame = 2
Query:  116 FTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 535
            F+ KD+ G+DV LSK+KGKVLLIVNVAS+CG T SNY EL+ LY+KYK QGFEILAFPCNQFGGQEPGSN EI+ FACTRFKAE+P+F KV+VNG    P+Y+FLKSS GGFLGD +KWNF KFLVD+ GKV++RY PTT
Sbjct:   25 FSDKDVKGQDVELSKYKGKVLLIVNVASQCGFTNSNYPELTTLYQKYKDQGFEILAFPCNQFGGQEPGSNEEIQVFACTRFKAEYPVFSKVNVNGKEADPLYKFLKSSKGGFLGDSIKWNFTKFLVDREGKVVDRYAPTT 164          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX2_ARATH (Probable glutathione peroxidase 2 OS=Arabidopsis thaliana GN=GPX2 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 5.953e-57
Identity = 102/145 (70.34%), Postives = 120/145 (82.76%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 535
            KS+YDFTVKDI G DV L ++KGK LL+VNVAS+CGLT +NY EL+ LYEKYK QG EILAFPCNQF GQEPG+N EI++  CTRFKAEFPIFDKVDVNG NTAP+Y++LK+  GG L D +KWNF KFLV  +GKV++RY P T
Sbjct:    7 KSIYDFTVKDIGGNDVSLDQYKGKTLLVVNVASKCGLTDANYKELNVLYEKYKEQGLEILAFPCNQFLGQEPGNNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLLIDAIKWNFTKFLVSPDGKVLQRYSPRT 151          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_HELAN (Glutathione peroxidase 1 OS=Helianthus annuus GN=GPXHA-1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 9.504e-55
Identity = 98/147 (66.67%), Postives = 121/147 (82.31%), Query Frame = 2
Query:   95 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 535
            ++K+LYDFTVKD  G DV LS +KGKV+LIVNVAS+CGLT ++Y EL+ +Y KYK +GFEILAFPCNQFG QEPG+N EI +F CT+FK+EFPIFDK+DVNG N APVY+FLK+   G LG  ++WNF KFLVDKNG+ ++ Y PTT
Sbjct:    5 SKKTLYDFTVKDAKGNDVDLSVYKGKVVLIVNVASKCGLTNNSYDELNQIYLKYKEKGFEILAFPCNQFGQQEPGTNEEIVDFVCTKFKSEFPIFDKIDVNGENAAPVYEFLKTGFYGILGGDIQWNFSKFLVDKNGQPVDCYYPTT 151          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX5_ARATH (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 4.415e-52
Identity = 94/150 (62.67%), Postives = 119/150 (79.33%), Query Frame = 2
Query:   83 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 532
            +++ +EKS++ FTVKD  GK+V LS ++GKVLL+VNVAS+CG T SNY++L+ LY KYK QGF +LAFPCNQF  QEPG++ E  +FACTRFKAE+P+F KV VNG N APVY+FLKS    FLG  +KWNF KFLV K+G+VI+RY  T
Sbjct:    6 SSSVSEKSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELYRKYKDQGFVVLAFPCNQFLSQEPGTSEEAHQFACTRFKAEYPVFQKVRVNGQNAAPVYKFLKSKKPSFLGSRIKWNFTKFLVGKDGQVIDRYGTT 155          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX8_ARATH (Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.087e-50
Identity = 86/145 (59.31%), Postives = 118/145 (81.38%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 535
            +S+Y+ +++D  G ++ LS++K KVLLIVNVAS+CG+T SNY+EL+ LY +YK +G EILAFPCNQFG +EPG+N +I +F CTRFK+EFPIF+K++VNG N +P+Y+FLK    G  GD ++WNF KFLVDKNG+ ++RY PTT
Sbjct:    7 ESVYELSIEDAKGNNLALSQYKDKVLLIVNVASKCGMTNSNYTELNELYNRYKDKGLEILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGKWGIFGDDIQWNFAKFLVDKNGQAVQRYYPTT 151          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX4_ARATH (Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.678e-49
Identity = 91/147 (61.90%), Postives = 115/147 (78.23%), Query Frame = 2
Query:   83 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY 523
            + +  E+S++ FTVKD  GKD+ +S ++GKVLLIVNVAS+CG T +NY++L+ LY KYK Q FEILAFPCNQF  QEPG++ E  EFAC RFKAE+P+F KV VNG N AP+Y+FLK+S   FLG  +KWNF KFLV K+G VI+RY
Sbjct:    4 SASVPERSVHQFTVKDSSGKDLNMSIYQGKVLLIVNVASKCGFTETNYTQLTELYRKYKDQDFEILAFPCNQFLYQEPGTSQEAHEFACERFKAEYPVFQKVRVNGQNAAPIYKFLKASKPTFLGSRIKWNFTKFLVGKDGLVIDRY 150          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX2_CAEEL (Probable glutathione peroxidase R05H10.5 OS=Caenorhabditis elegans GN=R05H10.5 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.002e-45
Identity = 83/144 (57.64%), Postives = 106/144 (73.61%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 535
            S++  TVK+  G+D PLS ++GKVL+IVNVAS+CGLT SNY++   L + YK  G E+LAFPCNQFGGQEP    +I  F   +FK E  +F K+DVNG NTAP+Y+FLK   GGFL D +KWNF KFLV ++G VI+R+ PTT
Sbjct:    3 SVHGITVKNAQGEDTPLSNYQGKVLIIVNVASQCGLTNSNYNQFKELLDVYKKDGLEVLAFPCNQFGGQEPSCEIDIAAFVADKFKFEPTLFQKIDVNGDNTAPLYKFLKQEKGGFLVDAIKWNFTKFLVGRDGHVIKRFSPTT 146          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_CAEEL (Probable glutathione peroxidase F26E4.12 OS=Caenorhabditis elegans GN=F26E4.12 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.425e-44
Identity = 80/144 (55.56%), Postives = 107/144 (74.31%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 535
            S+YDF VK+ +G DV LS +KGKVL+IVNVAS+CGLT  NY++L  L + YK  G E+LAFPCNQF GQEP    +I+ F   +FK E  +F K+DVNG   +P+++FLK+  GGF+ D +KWNF KFLV ++GK+I+R+ PTT
Sbjct:    3 SVYDFNVKNANGDDVSLSDYKGKVLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLAFPCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNEKGGFMFDAIKWNFTKFLVGRDGKIIKRFGPTT 146          
The following BLAST results are available for this feature:
BLAST of CX288921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX3_ARATH3.156e-5864.81Probable glutathione peroxidase 3, mitochondrial O... [more]
GPX4_GOSHI5.384e-5871.92Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_HELAN9.184e-5873.57Probable phospholipid hydroperoxide glutathione pe... [more]
GPX2_ARATH5.953e-5770.34Probable glutathione peroxidase 2 OS=Arabidopsis t... [more]
GPX1_HELAN9.504e-5566.67Glutathione peroxidase 1 OS=Helianthus annuus GN=G... [more]
GPX5_ARATH4.415e-5262.67Probable glutathione peroxidase 5 OS=Arabidopsis t... [more]
GPX8_ARATH1.087e-5059.31Probable glutathione peroxidase 8 OS=Arabidopsis t... [more]
GPX4_ARATH2.678e-4961.90Probable glutathione peroxidase 4 OS=Arabidopsis t... [more]
GPX2_CAEEL4.002e-4557.64Probable glutathione peroxidase R05H10.5 OS=Caenor... [more]
GPX1_CAEEL4.425e-4455.56Probable glutathione peroxidase F26E4.12 OS=Caenor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02006H11SK IF1 Citrus clementina cDNA clone C02006H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288921 ID=CX288921; Name=CX288921; organism=Citrus clementina; type=EST; length=535bp
AGGCTTTCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGT
TTTTCGTGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAG
AAGTCTTTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCC
TCTTAGCAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAA
GATGTGGCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAG
AAGTACAAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATT
TGGTGGGCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTA
CTAGGTTTAAGGCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGA
CCAAACACAGCTCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATT
TTTAGGCGACCTTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAA
ATGGTAAAGTCATCGAGAGATATCCACCAACTACC
back to top