CX288921

Overview
NameCX288921
Unique NameCX288921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX2_MOUSE (Glutathione peroxidase 2 OS=Mus musculus GN=Gpx2 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.531e-17
Identity = 56/165 (33.94%), Postives = 79/165 (47.88%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERY 523
            KS YD +   +DG+ +  + F+G+ +LI NVAS  G T  +Y++L+ L  ++  +   +L FPCNQFG QE   N EI       R    ++  F +  K DVNG N  PV+ +LK        D                    V WNFEKFL+   G+   RY
Sbjct:    6 KSFYDLSAIGLDGEKIDFNTFRGRAVLIENVASLUGTTTRDYNQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFSLTQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRY 169          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPXC_WUCBA (Cuticular glutathione peroxidase OS=Wuchereria bancrofti PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.611e-17
Identity = 57/167 (34.13%), Postives = 81/167 (48.50%), Query Frame = 2
Query:   95 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVK---------------WNFEKFLVDKNGKVIERYPP 529
            T +++YDF  + ++G    L++++ KVLLIVNVA+ C  T   Y + + +          IL FPCNQF  QEP  N E       ++            IF K++VNG N  P+Y+FLK      +  + K               WNFEKFLVDK G+   R+ P
Sbjct:   38 TNQTVYDFHAQMLNGAQRSLTEYRNKVLLIVNVATYCAYT-MQYRDFNPILGSNSNGTLNILGFPCNQFYLQEPAENHELLNGLKYVRPGHGWEPHKNMHIFGKLEVNGENDHPLYKFLKERCPPTVPVIGKRHQLIYDPIGTNDVIWNFEKFLVDKKGRPRYRFHP 203          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX2_PONPY (Glutathione peroxidase 2 OS=Pongo pygmaeus GN=GPX2 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.027e-16
Identity = 55/168 (32.74%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEF-----ACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPT 532
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPCNQFG QE   N EI          + ++  F +  K +VNG N  PV+ +LK        D                    V WNFEKFL+   G+   RY  T
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGSGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRT 172          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX2_HYLLA (Glutathione peroxidase 2 OS=Hylobates lar GN=GPX2 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.027e-16
Identity = 56/168 (33.33%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPT 532
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPCNQFG QE   N EI       R    ++  F +  K +VNG N  PV+ +LK        D                    V WNFEKFL+   G+   RY  T
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRT 172          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX2_HUMAN (Glutathione peroxidase 2 OS=Homo sapiens GN=GPX2 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.027e-16
Identity = 56/168 (33.33%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPT 532
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPCNQFG QE   N EI       R    ++  F +  K +VNG N  PV+ +LK        D                    V WNFEKFL+   G+   RY  T
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRT 172          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX2_CEBAP (Glutathione peroxidase 2 OS=Cebus apella GN=GPX2 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.752e-16
Identity = 55/168 (32.74%), Postives = 79/168 (47.02%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSA-------------------GGFLGDLVKWNFEKFLVDKNGKVIERYPPT 532
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPCNQFG QE   N EI       R    ++  F +  K +VNG N  PV+ +LK                             V WNFEKFL+   G+   RY  T
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKFIIWSPVCRSDVAWNFEKFLIGPEGEPFRRYSRT 172          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX2_CALJA (Glutathione peroxidase 2 OS=Callithrix jacchus GN=GPX2 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 55/168 (32.74%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPT 532
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPC+QFG QE   N EI       R    ++  F +  K +VNG N  PV+ +LK        D                    V WNFEKFL+   G+   RY  T
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCHQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRT 172          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX2_MACFU (Glutathione peroxidase 2 OS=Macaca fuscata fuscata GN=GPX2 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.937e-15
Identity = 55/168 (32.74%), Postives = 79/168 (47.02%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPT 532
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPCNQFG QE   N EI       R    ++  F +  K +VNG N  PV+ +LK        D                    V WNFEKFL+    +   RY  T
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEVEPFRRYSRT 172          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_CEBAP (Glutathione peroxidase 1 OS=Cebus apella GN=GPX1 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 54/170 (31.76%), Postives = 79/170 (46.47%), Query Frame = 2
Query:   89 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERY 523
            AA  +S+Y F+ + +  G+ V L   + K LLI NVAS  G T  +Y++++    +   +G  +L FPCN  G QE   N EI       R    F+  F +F+K +VNG     ++ FL+ +      D                    V WNFEKFLV  +G  + RY
Sbjct:    8 AAAAQSVYAFSARQLAGGEPVSLGSLRCKGLLIENVASLUGTTVRDYTQMNEPQRRLGPRGLVVLGFPCNHSGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKGEVNGAGAHTLFAFLREALPAPSDDATALMIDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRY 177          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_CALJA (Glutathione peroxidase 1 OS=Callithrix jacchus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 54/170 (31.76%), Postives = 79/170 (46.47%), Query Frame = 2
Query:   89 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERY 523
            AA  +S+Y F+ + +  G+ V L   + K LLI NVAS  G T  +Y++++    +   +G  +L FPCN  G QE   N EI       R    F+  F +F+K +VNG     ++ FL+ +      D                    V WNFEKFLV  +G  + RY
Sbjct:    8 AAAAQSVYAFSARQLAGGEPVSLGSLRCKGLLIENVASLUGTTVRDYTQMNEPQRRLGPRGLVVLGFPCNHSGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKGEVNGAGAHTLFAFLREALPAPSDDATALMIDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRY 177          
The following BLAST results are available for this feature:
BLAST of CX288921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX2_MOUSE3.531e-1733.94Glutathione peroxidase 2 OS=Mus musculus GN=Gpx2 P... [more]
GPXC_WUCBA4.611e-1734.13Cuticular glutathione peroxidase OS=Wuchereria ban... [more]
GPX2_PONPY1.027e-1632.74Glutathione peroxidase 2 OS=Pongo pygmaeus GN=GPX2... [more]
GPX2_HYLLA1.027e-1633.33Glutathione peroxidase 2 OS=Hylobates lar GN=GPX2 ... [more]
GPX2_HUMAN1.027e-1633.33Glutathione peroxidase 2 OS=Homo sapiens GN=GPX2 P... [more]
GPX2_CEBAP1.752e-1632.74Glutathione peroxidase 2 OS=Cebus apella GN=GPX2 P... [more]
GPX2_CALJA6.658e-1632.74Glutathione peroxidase 2 OS=Callithrix jacchus GN=... [more]
GPX2_MACFU1.937e-1532.74Glutathione peroxidase 2 OS=Macaca fuscata fuscata... [more]
GPX1_CEBAP2.797e-1431.76Glutathione peroxidase 1 OS=Cebus apella GN=GPX1 P... [more]
GPX1_CALJA2.797e-1431.76Glutathione peroxidase 1 OS=Callithrix jacchus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02006H11SK IF1 Citrus clementina cDNA clone C02006H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288921 ID=CX288921; Name=CX288921; organism=Citrus clementina; type=EST; length=535bp
AGGCTTTCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGT
TTTTCGTGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAG
AAGTCTTTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCC
TCTTAGCAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAA
GATGTGGCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAG
AAGTACAAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATT
TGGTGGGCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTA
CTAGGTTTAAGGCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGA
CCAAACACAGCTCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATT
TTTAGGCGACCTTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAA
ATGGTAAAGTCATCGAGAGATATCCACCAACTACC
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