CX288921

Overview
NameCX288921
Unique NameCX288921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX2_YEAST (Glutathione peroxidase 2 OS=Saccharomyces cerevisiae GN=GPX2 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.513e-39
Identity = 80/145 (55.17%), Postives = 96/145 (66.21%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG-DLVKWNFEKFLVDKNGKVIERYPPTT 535
            S YD   KD  G+     + KGKV+LIVNVAS+CG TP  Y EL  LY+KY+ +GF IL FPCNQFG QEPGS+ +I EF    +   FPI  K+DVNG N   VY +LKS   G LG   +KWNFEKFLVD NGKV++R+   T
Sbjct:    4 SFYDLECKDKKGESFKFDQLKGKVVLIVNVASKCGFTPQ-YKELEELYKKYQDKGFVILGFPCNQFGKQEPGSDEQITEFCQLNYGVTFPIMKKIDVNGSNADSVYNYLKSQKAGLLGFKGIKWNFEKFLVDSNGKVVQRFSSLT 147          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX3_YEAST (Peroxiredoxin HYR1 OS=Saccharomyces cerevisiae GN=HYR1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.282e-39
Identity = 81/143 (56.64%), Postives = 95/143 (66.43%), Query Frame = 2
Query:  110 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG-DLVKWNFEKFLVDKNGKVIERYPPTT 535
            Y     D  G+  P  + KGKV+LIVNVAS+CG TP  Y EL  LY++YK +GF I+ FPCNQFG QEPGS+ EI +F    +   FPI  K+DVNG N  PVY+FLKS   G LG   +KWNFEKFLVDK GKV ERY   T
Sbjct:    5 YKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTPQ-YKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLT 146          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_SCHPO (Glutathione peroxidase OS=Schizosaccharomyces pombe GN=gpx1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 9.548e-39
Identity = 77/138 (55.80%), Postives = 93/138 (67.39%), Query Frame = 2
Query:  110 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY 523
            YD   KD DG   P S  KGKV+L+VN AS+CG TP  Y  L  LY+KYK +GF IL FPCNQFG QEPGS+ EI +F    +   FP+  K++VNG N  PVYQFLKS       + +KWNFEKFLV++ G+VIERY
Sbjct:    5 YDLAPKDKDGNPFPFSNLKGKVVLVVNTASKCGFTPQ-YKGLEALYQKYKDRGFIILGFPCNQFGNQEPGSDEEIAQFCQKNYGVTFPVLAKINVNGDNVDPVYQFLKSQKKQLGLERIKWNFEKFLVNRQGQVIERY 141          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPO_SYNY3 (Putative glutathione peroxidase OS=Synechocystis sp. (strain PCC 6803) GN=slr1171 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.247e-38
Identity = 78/152 (51.32%), Postives = 104/152 (68.42%), Query Frame = 2
Query:   86 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG----FLG--DLVKWNFEKFLVDKNGKVIERY 523
            TA    ++Y F+   +DG  V L  F+GKVLLIVN AS+CG TP  Y  L  LY ++  +GF +L FPCNQFG QEPG + EIK F  TR+   FP+F+KV+VNGPN  P+++FL +++ G    FLG  + +KWNF KFLVD+ GKV++RY
Sbjct:    2 TAQANNTIYGFSANALDGSPVALRDFEGKVLLIVNTASQCGFTPQ-YQGLQALYNRFGDRGFTVLGFPCNQFGQQEPGGSGEIKNFCETRYGVTFPLFEKVEVNGPNAHPLFKFLTAASPGMAIPFLGGAEDIKWNFTKFLVDRQGKVVKRY 152          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPO_LACLA (Glutathione peroxidase OS=Lactococcus lactis subsp. lactis GN=gpo PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.629e-38
Identity = 74/144 (51.39%), Postives = 94/144 (65.28%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 535
            + YDF+   ++G+ V +S FKGKV+++VN AS+CG TP  +  L  LYE YK QG EIL FPCNQF  Q+ G N EI EF    +   FP+F K+ VNG    P+YQFLK  A G L   +KWNF KFL+D+ G VIER+ P T
Sbjct:    2 NFYDFSAFKMNGETVSMSDFKGKVVIVVNTASKCGFTPQ-FEGLEKLYENYKDQGLEILGFPCNQFVNQDAGENSEINEFCQLNYGVTFPMFQKIKVNGKEAHPLYQFLKKEAKGALSGTIKWNFTKFLIDREGNVIERFAPKT 144          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_SCHMA (Glutathione peroxidase OS=Schistosoma mansoni GN=GPX1 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 2.778e-38
Identity = 73/144 (50.69%), Postives = 100/144 (69.44%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 535
            S+Y+FTVKDI+G DV L K++G V LIVNVA + G T  NY +L  ++ +   +G  ILAFPCNQFGGQEP +  EIK+F   ++  +F +F K+ VNG +   +Y+FLKS   G L + +KWNF KFLVD+ G+ ++RY PTT
Sbjct:   10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKUGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTT 153          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPO_LACLM (Glutathione peroxidase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gpo PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.083e-38
Identity = 72/144 (50.00%), Postives = 95/144 (65.97%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 535
            + YDF+   ++G+ V +S +KGKV+++VN AS+CG TP  +  L  LYE YK QG EIL FPCNQF  Q+ G N EI EF    +   F +F K+ VNG    P+YQFLK  A G L   +KWNF KFL+D++G+VIER+ P T
Sbjct:    2 NFYDFSAVKMNGETVSMSDYKGKVVIVVNTASKCGFTPQ-FEGLEKLYETYKDQGLEILGFPCNQFANQDAGENTEINEFCQLNYGVTFTMFQKIKVNGKEAHPLYQFLKKEAKGALSGTIKWNFTKFLIDRDGQVIERFAPKT 144          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: BSAA_BACHD (Glutathione peroxidase homolog bsaA OS=Bacillus halodurans GN=bsaA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.801e-37
Identity = 73/144 (50.69%), Postives = 99/144 (68.75%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 535
            S+++F+ + I+G++  LS +K +VLLIVN AS+CGLTP  Y EL  LYE YK QGF +L FP NQF  QEPG + EI  F    +   FPIF+KV VNG    P++Q+L S  GG   + +KWNF KFL+D++G V++RY P+T
Sbjct:    2 SIHEFSARLINGEEKALSDYKDQVLLIVNTASKCGLTPQ-YEELQILYETYKDQGFTVLGFPSNQFMNQEPGDHNEIAAFCERNYGVSFPIFEKVKVNGKEAHPLFQYLTSQQGGLFTEKIKWNFTKFLIDRSGNVVKRYAPST 144          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: BSAA_BACSU (Glutathione peroxidase homolog bsaA OS=Bacillus subtilis GN=bsaA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.352e-37
Identity = 74/145 (51.03%), Postives = 96/145 (66.21%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG-DLVKWNFEKFLVDKNGKVIERYPPTT 535
            S+Y   V+ I GKD+ L  F GKVL+IVN AS+CG T S   +L  LY+ Y+ +G EIL FPCNQF  QEPG   +I+EF  T +   FP+F KVDVNG N  P++ +L   A G LG   +KWNF KF+VD+NG+++ RY P T
Sbjct:    2 SIYHMKVRTITGKDMTLQPFAGKVLMIVNTASKCGFT-SQLKQLQELYDTYQQEGLEILGFPCNQFMNQEPGEEADIQEFCETNYGVTFPMFSKVDVNGKNAHPLFVYLTEHAKGMLGTKAIKWNFTKFIVDRNGEIVGRYSPNT 145          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX4_BOVIN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Bos taurus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 3.396e-36
Identity = 72/145 (49.66%), Postives = 102/145 (70.34%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 529
            +S+++F+ KDIDG+ V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P
Sbjct:   39 RSMHEFSAKDIDGRMVNLDKYRGHVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNAEIKEFA-AGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGP 182          
The following BLAST results are available for this feature:
BLAST of CX288921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX2_YEAST2.513e-3955.17Glutathione peroxidase 2 OS=Saccharomyces cerevisi... [more]
GPX3_YEAST3.282e-3956.64Peroxiredoxin HYR1 OS=Saccharomyces cerevisiae GN=... [more]
GPX1_SCHPO9.548e-3955.80Glutathione peroxidase OS=Schizosaccharomyces pomb... [more]
GPO_SYNY31.247e-3851.32Putative glutathione peroxidase OS=Synechocystis s... [more]
GPO_LACLA1.629e-3851.39Glutathione peroxidase OS=Lactococcus lactis subsp... [more]
GPX1_SCHMA2.778e-3850.69Glutathione peroxidase OS=Schistosoma mansoni GN=G... [more]
GPO_LACLM8.083e-3850.00Glutathione peroxidase OS=Lactococcus lactis subsp... [more]
BSAA_BACHD1.801e-3750.69Glutathione peroxidase homolog bsaA OS=Bacillus ha... [more]
BSAA_BACSU2.352e-3751.03Glutathione peroxidase homolog bsaA OS=Bacillus su... [more]
GPX4_BOVIN3.396e-3649.66Phospholipid hydroperoxide glutathione peroxidase,... [more]

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Properties
Property NameValue
Genbank descriptionC02006H11SK IF1 Citrus clementina cDNA clone C02006H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288921 ID=CX288921; Name=CX288921; organism=Citrus clementina; type=EST; length=535bp
AGGCTTTCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGT
TTTTCGTGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAG
AAGTCTTTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCC
TCTTAGCAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAA
GATGTGGCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAG
AAGTACAAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATT
TGGTGGGCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTA
CTAGGTTTAAGGCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGA
CCAAACACAGCTCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATT
TTTAGGCGACCTTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAA
ATGGTAAAGTCATCGAGAGATATCCACCAACTACC
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