CX288921

Overview
NameCX288921
Unique NameCX288921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: BSAA_STAES (Glutathione peroxidase homolog bsaA OS=Staphylococcus epidermidis (strain ATCC 12228) GN=bsaA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.793e-36
Identity = 70/143 (48.95%), Postives = 95/143 (66.43%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 529
            +S+YDF V+  +G+   L ++KG V+LIVN AS CG TP  +  L  LY++YK Q F IL FPCNQFGGQEPGS  E  +     +   FPI +KVDV G N  P++ FL ++A G + + +KWNF KFL+D+ G VI+R+ P
Sbjct:    2 ESIYDFVVQKNNGESYKLEQYKGDVMLIVNTASECGFTPQ-FEGLQKLYDEYKDQRFIILGFPCNQFGGQEPGSGEEAAQNCKINYGVTFPIHEKVDVKGDNQHPLFHFLTNAAKGMINEKIKWNFTKFLIDREGNVIKRFSP 143          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX4_CALJA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Callithrix jacchus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.290e-35
Identity = 73/145 (50.34%), Postives = 101/145 (69.66%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 529
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFLVDKNG V++RY P
Sbjct:   39 RSMHEFSAKDIDGHTVNLDKYRGFVCIVTNVASQUGKTQVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGTLGNAIKWNFTKFLVDKNGCVVKRYGP 182          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX4_PONPY (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Pongo pygmaeus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.685e-35
Identity = 72/145 (49.66%), Postives = 101/145 (69.66%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 529
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P
Sbjct:   39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGP 182          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX4_HUMAN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Homo sapiens GN=GPX4 PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.685e-35
Identity = 72/145 (49.66%), Postives = 101/145 (69.66%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 529
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P
Sbjct:   39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGP 182          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX4_CEBAP (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Cebus apella GN=GPX4 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.875e-35
Identity = 72/144 (50.00%), Postives = 100/144 (69.44%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 529
            S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P
Sbjct:   40 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGP 182          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX4_PIG (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Sus scrofa GN=GPX4 PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 4.904e-35
Identity = 71/145 (48.97%), Postives = 101/145 (69.66%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 529
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGS+ EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P
Sbjct:   39 RSMHEFSAKDIDGHMVNLDKYRGYVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSDAEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGP 182          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX41_MOUSE (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Mus musculus GN=Gpx4 PE=1 SV=4)

HSP 1 Score: 147.132 bits (370), Expect = 4.904e-35
Identity = 71/145 (48.97%), Postives = 101/145 (69.66%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 529
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F ++ K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P
Sbjct:   39 RSMHEFSAKDIDGHMVCLDKYRGFVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGP 182          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX4_MACFU (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Macaca fuscata fuscata GN=GPX4 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 6.404e-35
Identity = 71/145 (48.97%), Postives = 101/145 (69.66%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 529
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN +IKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P
Sbjct:   39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGVRILAFPCNQFGKQEPGSNEKIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGP 182          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX42_RAT (Phospholipid hydroperoxide glutathione peroxidase, nuclear OS=Rattus norvegicus GN=Gpx4 PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 8.365e-35
Identity = 71/145 (48.97%), Postives = 99/145 (68.28%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 529
            +S+++F  KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +   F ++ K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P
Sbjct:   95 RSMHEFAAKDIDGHMVCLDKYRGCVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVRFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGP 238          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX41_RAT (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Rattus norvegicus GN=Gpx4 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 8.365e-35
Identity = 71/145 (48.97%), Postives = 99/145 (68.28%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 529
            +S+++F  KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +   F ++ K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P
Sbjct:   39 RSMHEFAAKDIDGHMVCLDKYRGCVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVRFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGP 182          
The following BLAST results are available for this feature:
BLAST of CX288921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
BSAA_STAES5.793e-3648.95Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPX4_CALJA1.290e-3550.34Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_PONPY1.685e-3549.66Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_HUMAN1.685e-3549.66Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_CEBAP2.875e-3550.00Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_PIG4.904e-3548.97Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX41_MOUSE4.904e-3548.97Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_MACFU6.404e-3548.97Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX42_RAT8.365e-3548.97Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX41_RAT8.365e-3548.97Phospholipid hydroperoxide glutathione peroxidase,... [more]

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Properties
Property NameValue
Genbank descriptionC02006H11SK IF1 Citrus clementina cDNA clone C02006H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288921 ID=CX288921; Name=CX288921; organism=Citrus clementina; type=EST; length=535bp
AGGCTTTCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGT
TTTTCGTGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAG
AAGTCTTTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCC
TCTTAGCAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAA
GATGTGGCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAG
AAGTACAAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATT
TGGTGGGCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTA
CTAGGTTTAAGGCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGA
CCAAACACAGCTCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATT
TTTAGGCGACCTTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAA
ATGGTAAAGTCATCGAGAGATATCCACCAACTACC
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