CX288921

Overview
NameCX288921
Unique NameCX288921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX42_MOUSE (Phospholipid hydroperoxide glutathione peroxidase, nuclear OS=Mus musculus GN=Gpx4 PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 2.434e-34
Identity = 70/145 (48.28%), Postives = 100/145 (68.97%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 529
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F ++ K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG  ++RY P
Sbjct:   95 RSMHEFSAKDIDGHMVCLDKYRGFVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCEVKRYGP 238          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_YEAST (Glutathione peroxidase 1 OS=Saccharomyces cerevisiae GN=GPX1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.060e-33
Identity = 69/142 (48.59%), Postives = 92/142 (64.79%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG-DLVKWNFEKFLVDKNGKVIERY 523
            +  Y F+  D +G   P +  + KV+LIVNVAS C  TP  Y EL +LYEKYK+ G  I+AFPC QFG QE   + EI +F   ++   FPI  K+  NG    PVY+FLK+S  G  G  ++KWNFEKF+VD+NGKV++R+
Sbjct:    2 QEFYSFSPIDENGNPFPFNSLRNKVVLIVNVASHCAFTPQ-YKELEYLYEKYKSHGLVIVAFPCGQFGNQEFEKDKEINKFCQDKYGVTFPILHKIRCNGQKQDPVYKFLKNSVSGKSGIKMIKWNFEKFVVDRNGKVVKRF 142          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX4_HYLLA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Hylobates lar GN=GPX4 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 2.691e-33
Identity = 69/144 (47.92%), Postives = 97/144 (67.36%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 529
            S+++F+ K +DG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G   LAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL DKNG V++RY P
Sbjct:   40 SMHEFSAKVLDGHTVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRFLAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLFDKNGCVVKRYGP 182          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_CHLRE (Glutathione peroxidase 1, mitochondrial OS=Chlamydomonas reinhardtii GN=GPX PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 6.628e-32
Identity = 76/156 (48.72%), Postives = 95/156 (60.90%), Query Frame = 2
Query:   74 GVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR--FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 535
            G   T++T  + +  +  DID K+V       +V+L+VNVAS+ GLT +NY E + L  KY      I+AFPCNQFGGQEPG+N EIK FA  R    A   + DKVDVNG N +PVY FLK +AG      + WNF KFLV  +G V  RY PTT
Sbjct:   33 GSKPTSSTS-NFHQLSALDIDKKNVDFKSLNNRVVLVVNVASKUGLTAANYKEFATLLGKYPATDLTIVAFPCNQFGGQEPGTNAEIKAFASARGFSGAGALLMDKVDVNGANASPVYNFLKVAAGDTSD--IGWNFGKFLVRPDGTVFGRYAPTT 185          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: BTUE_ECOLI (Vitamin B12 transport periplasmic protein btuE OS=Escherichia coli (strain K12) GN=btuE PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.656e-32
Identity = 74/164 (45.12%), Postives = 99/164 (60.37%), Query Frame = 2
Query:   98 EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA--------GGFLGDLVK------------WNFEKFLVDKNGKVIERYPP 529
            + S+    VKDIDG+   L KF G VLLIVNVAS+CGLTP  Y +L ++ + +  +GF +L FPCNQF  QEPGS+ EIK +  T +   FP+F K++VNG    P+YQ L ++A         GF   +V             WNFEKFLV ++GKVI+R+ P
Sbjct:    2 QDSILTTVVKDIDGEVTTLEKFAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWVDRGFMVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGKVIQRFSP 164          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX7_MOUSE (Glutathione peroxidase 7 OS=Mus musculus GN=Gpx7 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.637e-30
Identity = 66/150 (44.00%), Postives = 87/150 (58.00%), Query Frame = 2
Query:   83 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 532
            A A +E+  YDF   +I GK V L K++G V L+VNVAS CG T  NY  L  L        F +LAFPCNQFG QEP +N EI+ FA   +   FP+F K+ V G    P +++L  ++    G    WNF K+LVD +GKV+  + PT
Sbjct:   16 ACAQSEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQNYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNREIENFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTS----GKEPTWNFWKYLVDPDGKVVGAWDPT 161          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: BSAA_STAEQ (Glutathione peroxidase homolog bsaA OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=bsaA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.203e-30
Identity = 62/142 (43.66%), Postives = 87/142 (61.27%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 529
            S+YD  V++ DG    L ++KGKVL+IVN A+ C L    +++L  LY+KY   G EIL+FPCN F  QEPG   +I      +F   FPI  K++VNG +  P+Y  LK    G  G  +KWNF KF+VD+ G +++R+ P
Sbjct:    2 SIYDIAVENYDGSTYLLKRYKGKVLIIVNTATNCTLN-DQFNKLEMLYKKYHKYGLEILSFPCNDFNNQEPGLIKDIYRVYKYKFGITFPIHAKINVNGEHEHPLYTLLKCKQPGLFGSQIKWNFTKFVVDQQGNIVKRFLP 142          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX7_BOVIN (Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.251e-29
Identity = 66/150 (44.00%), Postives = 85/150 (56.67%), Query Frame = 2
Query:   83 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 532
            A A  E+  YDF   +I GK V L K++G V L+VNVAS CG T  +Y  L  L        F +LAFPCNQFG QEP SN EI+ FA   +   FP+F K+ V G    P +++L  ++    G    WNF K+LV  +GKVI  + PT
Sbjct:   16 ACAPREQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTETS----GKEPTWNFWKYLVAPDGKVIGAWDPT 161          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX7_HUMAN (Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.859e-29
Identity = 65/150 (43.33%), Postives = 85/150 (56.67%), Query Frame = 2
Query:   83 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 532
            A A  E+  YDF   +I GK V L K++G V L+VNVAS CG T  +Y  L  L        F +LAFPCNQFG QEP SN EI+ FA   +   FP+F K+ V G    P +++L  ++    G    WNF K+LV  +GKV+  + PT
Sbjct:   17 ACAQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS----GKEPTWNFWKYLVAPDGKVVGAWDPT 162          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX8_BOVIN (Probable glutathione peroxidase 8 OS=Bos taurus GN=GPX8 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.583e-28
Identity = 63/142 (44.37%), Postives = 85/142 (59.86%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 529
            S Y F VKD +G+ V L KFKGKV L+VNVAS C LT  NY  L  L++++    F +LAFPCNQFG  EP  + E+  FA   F   FPIF K+ + G    P ++FL  S+        +WNF K+LV+  G+V++ + P
Sbjct:   46 SFYTFEVKDANGRVVSLEKFKGKVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFARNNFGVTFPIFHKIKILGSEAEPAFRFLVDSS----KKEPRWNFWKYLVNPEGQVVKTWRP 183          
The following BLAST results are available for this feature:
BLAST of CX288921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX42_MOUSE2.434e-3448.28Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX1_YEAST2.060e-3348.59Glutathione peroxidase 1 OS=Saccharomyces cerevisi... [more]
GPX4_HYLLA2.691e-3347.92Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX1_CHLRE6.628e-3248.72Glutathione peroxidase 1, mitochondrial OS=Chlamyd... [more]
BTUE_ECOLI8.656e-3245.12Vitamin B12 transport periplasmic protein btuE OS=... [more]
GPX7_MOUSE3.637e-3044.00Glutathione peroxidase 7 OS=Mus musculus GN=Gpx7 P... [more]
BSAA_STAEQ6.203e-3043.66Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPX7_BOVIN5.251e-2944.00Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=... [more]
GPX7_HUMAN6.859e-2943.33Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 P... [more]
GPX8_BOVIN7.583e-2844.37Probable glutathione peroxidase 8 OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC02006H11SK IF1 Citrus clementina cDNA clone C02006H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288921 ID=CX288921; Name=CX288921; organism=Citrus clementina; type=EST; length=535bp
AGGCTTTCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGT
TTTTCGTGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAG
AAGTCTTTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCC
TCTTAGCAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAA
GATGTGGCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAG
AAGTACAAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATT
TGGTGGGCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTA
CTAGGTTTAAGGCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGA
CCAAACACAGCTCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATT
TTTAGGCGACCTTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAA
ATGGTAAAGTCATCGAGAGATATCCACCAACTACC
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