CX288921

Overview
NameCX288921
Unique NameCX288921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX3_BOVIN (Glutathione peroxidase 3 OS=Bos taurus GN=GPX3 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.000e-20
Identity = 65/163 (39.88%), Postives = 86/163 (52.76%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLVDKNGKVIERY 523
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+ +  G  IL FPCNQFG QEPG N EI   A  +       F   F +F+K DVNG      Y FLK+S       LG              ++WNFEKFLV  +G  I R+
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLT-GQYVELNALQEELEPFGLVILGFPCNQFGKQEPGENSEI--LATLKYVRPGGGFTPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGSPDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRW 198          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPXC_DIRIM (Glutathione peroxidase OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.612e-20
Identity = 61/168 (36.31%), Postives = 88/168 (52.38%), Query Frame = 2
Query:   95 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKS---SAGGFLGDL------------VKWNFEKFLVDKNGKVIERYPPT 532
            T +++YDF V  +DG +  L++++GKVLL+VNVA+ C  T   Y++ + + E       +ILAFPCNQF  QEP  N E       ++            IF KV+VNG +  P+Y+FLK         +GD             + WNFEKFL+DK G    R+ P+
Sbjct:   36 TSQTIYDFHVPTLDGSEKSLAEYRGKVLLLVNVATYCAYT-FQYNDFNPMLENNSNGTLKILAFPCNQFLLQEPAENHELLNGLKYVRPGNGWEPHGNMHIFGKVEVNGDDHHPLYKFLKEHCPQTVPIIGDRHQLMYNPIGTNDIIWNFEKFLIDKKGHPRYRFHPS 202          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX3_RAT (Glutathione peroxidase 3 OS=Rattus norvegicus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.612e-20
Identity = 66/161 (40.99%), Postives = 85/161 (52.80%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAG------GFLGDL---------VKWNFEKFLVDKNGKVIERY 523
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S        G  G L         ++WNFEKFLV  +G  I R+
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLT-DQYLELNALQEELGPFGLVILGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPIMRW 198          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_RAT (Glutathione peroxidase 1 OS=Rattus norvegicus GN=Gpx1 PE=1 SV=4)

HSP 1 Score: 98.2117 bits (243), Expect = 2.612e-20
Identity = 59/171 (34.50%), Postives = 88/171 (51.46%), Query Frame = 2
Query:   86 TAATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERY 523
            +A  + ++Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y+E++ L ++   +G  +L FPCNQFG QE G N EI       R    F+  F +F+K +VNG    P++ FL+++      D                    + WNFEKFLV  +G  + RY
Sbjct:    7 SAVAQSTVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTTRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPAPSDDPTALMTDPKYIIWSPVCRNDISWNFEKFLVGPDGVPVRRY 177          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX5_MACFA (Epididymal secretory glutathione peroxidase OS=Macaca fascicularis GN=GPX5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.412e-20
Identity = 63/161 (39.13%), Postives = 85/161 (52.80%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSA---GGFLGDL------------VKWNFEKFLVDKNGKVIERY 523
            ++YD+    ++  + VP  ++ GK +L VNVA+ CGLT + Y EL+ L E+ K  G  +L FPCNQFG QEPG N EI       R    F   F +F+K DVNG     V+ FLK S       LG              ++WNFEKFLV  +G  + R+
Sbjct:   39 TIYDYEAIALNKNEYVPFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRW 198          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX3_HYLLA (Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.412e-20
Identity = 65/161 (40.37%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLVDKNGKVIERY 523
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S       LG              ++WNFEKFLV  +G  I R+
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGTPIMRW 198          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_MOUSE (Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.412e-20
Identity = 60/171 (35.09%), Postives = 89/171 (52.05%), Query Frame = 2
Query:   86 TAATEKSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERY 523
            +AA + ++Y F+ + + G + V L   +GKVLLI NVAS  G T  +Y+E++ L ++   +G  +L FPCNQFG QE G N EI       R    F+  F +F+K +VNG    P++ FL+++      D                    + WNFEKFLV  +G  + RY
Sbjct:    7 SAAAQSTVYAFSARPLTGGEPVSLGSLRGKVLLIENVASLUGTTIRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPTPSDDPTALMTDPKYIIWSPVCRNDIAWNFEKFLVGPDGVPVRRY 177          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX3_PONPY (Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 5.820e-20
Identity = 65/161 (40.37%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLVDKNGKVIERY 523
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S       LG              ++WNFEKFLV  +G  I R+
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRW 198          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX3_HUMAN (Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 5.820e-20
Identity = 65/161 (40.37%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLVDKNGKVIERY 523
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S       LG              ++WNFEKFLV  +G  I R+
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRW 198          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX_MCV1 (Glutathione peroxidase OS=Molluscum contagiosum virus subtype 1 GN=GPX1 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 9.927e-20
Identity = 61/188 (32.45%), Postives = 88/188 (46.81%), Query Frame = 2
Query:   35 SNLPGFFVKRRSFGVHATAATEKSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEF-----ACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERY 523
            +  P F      +     AA  +S+Y F+ + I G + V L   +G+VLLI NVAS  G T   Y++++ L  +   +G  +L FPCNQFG QE   N EI            F+  F +F+K +VNG    P++ FL+ +      D+                   V WNFEKFLV  +G  + RY
Sbjct:    7 ARFPRFSELCAKYAAQLAAAETRSVYAFSARPITGGEPVSLGFLRGRVLLIENVASLUGSTVREYTQMNELQRRLGARGLVVLGFPCNQFGHQENAQNAEILPSLKHVRPGNGFEPNFMLFEKCEVNGARAHPLFAFLREALPAPSDDMSTLVSDPQLIAWSPVCRNDVAWNFEKFLVGADGTPVRRY 194          
The following BLAST results are available for this feature:
BLAST of CX288921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX3_BOVIN2.000e-2039.88Glutathione peroxidase 3 OS=Bos taurus GN=GPX3 PE=... [more]
GPXC_DIRIM2.612e-2036.31Glutathione peroxidase OS=Dirofilaria immitis PE=2... [more]
GPX3_RAT2.612e-2040.99Glutathione peroxidase 3 OS=Rattus norvegicus GN=G... [more]
GPX1_RAT2.612e-2034.50Glutathione peroxidase 1 OS=Rattus norvegicus GN=G... [more]
GPX5_MACFA3.412e-2039.13Epididymal secretory glutathione peroxidase OS=Mac... [more]
GPX3_HYLLA3.412e-2040.37Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 ... [more]
GPX1_MOUSE3.412e-2035.09Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 P... [more]
GPX3_PONPY5.820e-2040.37Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3... [more]
GPX3_HUMAN5.820e-2040.37Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 P... [more]
GPX_MCV19.927e-2032.45Glutathione peroxidase OS=Molluscum contagiosum vi... [more]

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Properties
Property NameValue
Genbank descriptionC02006H11SK IF1 Citrus clementina cDNA clone C02006H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288921 ID=CX288921; Name=CX288921; organism=Citrus clementina; type=EST; length=535bp
AGGCTTTCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGT
TTTTCGTGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAG
AAGTCTTTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCC
TCTTAGCAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAA
GATGTGGCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAG
AAGTACAAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATT
TGGTGGGCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTA
CTAGGTTTAAGGCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGA
CCAAACACAGCTCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATT
TTTAGGCGACCTTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAA
ATGGTAAAGTCATCGAGAGATATCCACCAACTACC
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