CX288921

Overview
NameCX288921
Unique NameCX288921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX6_HUMAN (Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 9.927e-20
Identity = 60/155 (38.71%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI---KEFAC--TRFKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLVDKNG 505
            ++Y++    ++G++ +   +F GK +L VNVA+  GL  + Y EL+ L E+ K  G  +LAFPCNQFG QEPG+N EI    ++ C  + F   F +F+K DVNG     V+ FLK+S       LG              ++WNFEKFLV  +G
Sbjct:   39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDG 192          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX5_PIG (Epididymal secretory glutathione peroxidase OS=Sus scrofa GN=GPX5 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.927e-20
Identity = 61/161 (37.89%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAG------GFLGDL---------VKWNFEKFLVDKNGKVIERY 523
            ++YD+    ++G + +   ++ GK +L VNVA+ CGLT + Y EL+ L E+ K  G  +L FPCNQFG QEPG N EI       R    +   F +F+K DVNG     V+ FLK S        G +G +         ++WNFEKFLV  +G  + R+
Sbjct:   37 TIYDYDAFTLNGNEHIQFKQYAGKHVLFVNVATYCGLT-AQYPELNTLQEELKPFGLVVLGFPCNQFGKQEPGENSEILLGLKYVRPGGGYVPNFQLFEKGDVNGEKEQKVFTFLKHSCPHPSELIGSIGYISWEPIRVHDIRWNFEKFLVGPDGVPVMRW 196          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_PONPY (Glutathione peroxidase 1 OS=Pongo pygmaeus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 9.927e-20
Identity = 60/170 (35.29%), Postives = 85/170 (50.00%), Query Frame = 2
Query:   89 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERY 523
            AA  +S+Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI       R    F+  F +F+K +VNG    P++ FL+ +      D                    V WNFEKFLV  +G  + RY
Sbjct:    8 AAAAQSVYSFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRY 177          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX3_CEBAP (Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.296e-19
Identity = 63/161 (39.13%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLVDKNGKVIERY 523
            ++Y++    IDG++  P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G ++L FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S       LG              ++WNFEKFLV  +G  + R+
Sbjct:   39 TIYEYGALTIDGEEYTPFKQYIGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLDLLGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPVMRW 198          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_PIG (Glutathione peroxidase 1 OS=Sus scrofa GN=GPX1 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.296e-19
Identity = 59/172 (34.30%), Postives = 88/172 (51.16%), Query Frame = 2
Query:   89 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLKSS-------AGGFLGDL------------VKWNFEKFLVDKNGKVIERY 523
            A   +S+Y F+ + +  G+ + L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI    C +       F+  F +F+K +VNG N  P++ FL+ +       A   + D             + WNFEKFLV  +G  + RY
Sbjct:   13 AVAPRSVYAFSARPLAGGEPISLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNGEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGANAHPLFAFLREALPTPSDDATALMTDPKFITWSPVCRNDIAWNFEKFLVGPDGVPLRRY 182          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_MACFU (Glutathione peroxidase 1 OS=Macaca fuscata fuscata GN=GPX1 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.296e-19
Identity = 60/170 (35.29%), Postives = 85/170 (50.00%), Query Frame = 2
Query:   89 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERY 523
            AA  +S+Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI       R    F+  F +F+K +VNG    P++ FL+ +      D                    V WNFEKFLV  +G  + RY
Sbjct:    8 AAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLIAWSPVCRNDVAWNFEKFLVGPDGVPVRRY 177          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX5_RAT (Epididymal secretory glutathione peroxidase OS=Rattus norvegicus GN=Gpx5 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.693e-19
Identity = 62/161 (38.51%), Postives = 85/161 (52.80%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLK-----------SSAGGFLGDL----VKWNFEKFLVDKNGKVIERY 523
            ++Y++    ++GK+ +P  ++ GK +L VNVA+ CGLT   Y EL+ L +  K  G  IL FPCNQFG QEPG N EI       R    F   F +F K DVNG     ++ FLK           +S   F   +    ++WNFEKFLV  NG  + R+
Sbjct:   39 TIYNYEALSLNGKERIPFKQYAGKHVLFVNVATYCGLT-IQYPELNALQDDLKQFGLVILGFPCNQFGKQEPGDNTEILPGLKYVRPGKGFLPNFQLFAKGDVNGEKEQEIFTFLKRSCPHPSETVVTSKHTFWEPIKVHDIRWNFEKFLVGPNGVPVMRW 198          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX3_MACFU (Glutathione peroxidase 3 OS=Macaca fuscata fuscata GN=GPX3 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.693e-19
Identity = 63/161 (39.13%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLVDKNGKVIERY 523
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  +L FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S       LG              ++WNFEKFLV  +G  + R+
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYIGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVLLGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPVMRW 198          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_HUMAN (Glutathione peroxidase 1 OS=Homo sapiens GN=GPX1 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.693e-19
Identity = 60/170 (35.29%), Postives = 85/170 (50.00%), Query Frame = 2
Query:   89 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERY 523
            AA  +S+Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI       R    F+  F +F+K +VNG    P++ FL+ +      D                    V WNFEKFLV  +G  + RY
Sbjct:    8 AAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRY 177          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX6_MOUSE (Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19
Identity = 63/161 (39.13%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLVDKNGKVIERY 523
            ++Y++    IDG   V   ++ GK +L VNVAS CGLT + Y EL+ L E+ K     +L FPCNQFG QEPG N EI       R    +   F +F+K DVNG N   V+ FLK+S        G              ++WNFEKFLV  +G  + R+
Sbjct:   39 TVYEYGANTIDGGGFVNFQQYAGKHILFVNVASFCGLT-ATYPELNTLQEELKPFNVTVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGYVPNFQLFEKGDVNGDNEQKVFSFLKNSCPPTSELFGSPEHLFWDPMKIHDIRWNFEKFLVGPDGVPVMRW 198          
The following BLAST results are available for this feature:
BLAST of CX288921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX6_HUMAN9.927e-2038.71Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 P... [more]
GPX5_PIG9.927e-2037.89Epididymal secretory glutathione peroxidase OS=Sus... [more]
GPX1_PONPY9.927e-2035.29Glutathione peroxidase 1 OS=Pongo pygmaeus GN=GPX1... [more]
GPX3_CEBAP1.296e-1939.13Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 P... [more]
GPX1_PIG1.296e-1934.30Glutathione peroxidase 1 OS=Sus scrofa GN=GPX1 PE=... [more]
GPX1_MACFU1.296e-1935.29Glutathione peroxidase 1 OS=Macaca fuscata fuscata... [more]
GPX5_RAT1.693e-1938.51Epididymal secretory glutathione peroxidase OS=Rat... [more]
GPX3_MACFU1.693e-1939.13Glutathione peroxidase 3 OS=Macaca fuscata fuscata... [more]
GPX1_HUMAN1.693e-1935.29Glutathione peroxidase 1 OS=Homo sapiens GN=GPX1 P... [more]
GPX6_MOUSE2.211e-1939.13Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 P... [more]

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Properties
Property NameValue
Genbank descriptionC02006H11SK IF1 Citrus clementina cDNA clone C02006H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288921 ID=CX288921; Name=CX288921; organism=Citrus clementina; type=EST; length=535bp
AGGCTTTCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGT
TTTTCGTGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAG
AAGTCTTTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCC
TCTTAGCAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAA
GATGTGGCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAG
AAGTACAAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATT
TGGTGGGCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTA
CTAGGTTTAAGGCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGA
CCAAACACAGCTCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATT
TTTAGGCGACCTTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAA
ATGGTAAAGTCATCGAGAGATATCCACCAACTACC
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