CX288921

Overview
NameCX288921
Unique NameCX288921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_HYLLA (Glutathione peroxidase 1 OS=Hylobates lar GN=GPX1 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.211e-19
Identity = 59/170 (34.71%), Postives = 85/170 (50.00%), Query Frame = 2
Query:   89 AATEKSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERY 523
            AA  +S+Y F+ + + G + V L   +GK+LLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI       R    F+  F +F+K +VNG    P++ FL+ +      D                    V WNFEKFLV  +G  + RY
Sbjct:    8 AAAAQSVYAFSARPLTGGEPVSLGSLRGKILLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRY 177          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX5_HUMAN (Epididymal secretory glutathione peroxidase OS=Homo sapiens GN=GPX5 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.888e-19
Identity = 62/161 (38.51%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSA---GGFLGDL------------VKWNFEKFLVDKNGKVIERY 523
            ++YD+    ++  + V   ++ GK +L VNVA+ CGLT + Y EL+ L E+ K  G  +L FPCNQFG QEPG N EI       R    F   F +F+K DVNG     V+ FLK S       LG              ++WNFEKFLV  +G  + R+
Sbjct:   39 TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRW 198          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_BOVIN (Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 3.772e-19
Identity = 60/172 (34.88%), Postives = 87/172 (50.58%), Query Frame = 2
Query:   89 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLK-------SSAGGFLGDL------------VKWNFEKFLVDKNGKVIERY 523
            AA  +++Y F+ + +  G+   LS  +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI    C +       F+  F +F+K +VNG    P++ FL+         A   + D             V WNFEKFLV  +G  + RY
Sbjct:   13 AAAPRTVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLUGTTVRDYTQMNDLQRRLGPRGLVVLGFPCNQFGHQENAKNEEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLREVLPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRY 182          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX3_MOUSE (Glutathione peroxidase 3 OS=Mus musculus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.927e-19
Identity = 64/161 (39.75%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAG------GFLGDL---------VKWNFEKFLVDKNGKVIERY 523
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FP NQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S        G  G L         ++WNFEKFLV  +G  + R+
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLT-DQYLELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRW 198          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPXC_BRUPA (Cuticular glutathione peroxidase OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.433e-18
Identity = 59/167 (35.33%), Postives = 83/167 (49.70%), Query Frame = 2
Query:   95 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVK---------------WNFEKFLVDKNGKVIERYPP 529
            T +++YDF V+ ++G    L++++ KVLLIVNVA+ C  T   Y + + + E        IL FPCNQF  QEP  N E       ++            IF K++VNG N  P+Y+FLK      +  + K               WNFEKFLVDK G+   R+ P
Sbjct:   38 TNQTVYDFQVQMLNGAQKSLAEYRNKVLLIVNVATYCAYT-MQYRDFNPILESNSNGTLNILGFPCNQFYLQEPAENHELLSGLKYVRPGHGWEPHKNMHIFGKLEVNGENDHPLYKFLKERCPPTVPVIGKRHQLIYDPIGTNDVIWNFEKFLVDKKGRPRYRFHP 203          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPXC_BRUMA (Cuticular glutathione peroxidase OS=Brugia malayi PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.433e-18
Identity = 59/167 (35.33%), Postives = 83/167 (49.70%), Query Frame = 2
Query:   95 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVK---------------WNFEKFLVDKNGKVIERYPP 529
            T +++YDF V+ ++G    L++++ KVLLIVNVA+ C  T   Y + + + E        IL FPCNQF  QEP  N E       ++            IF K++VNG N  P+Y+FLK      +  + K               WNFEKFLVDK G+   R+ P
Sbjct:   38 TNQTVYDFQVQMLNGAQKSLAEYRNKVLLIVNVATYCAYT-MQYRDFNPILESNSNGTLNILGFPCNQFYLQEPAENHELLSGLKYVRPGHGWEPHKNMHIFGKLEVNGENDHPLYKFLKERCPPTVPVIGKRHQLIYDPIGTNDVIWNFEKFLVDKKGRPRYRFHP 203          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_PANTR (Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX1 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.433e-18
Identity = 59/170 (34.71%), Postives = 84/170 (49.41%), Query Frame = 2
Query:   89 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERY 523
            AA  +S+Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI       R    F+  F +F+K +VNG     ++ FL+ +      D                    V WNFEKFLV  +G  + RY
Sbjct:    8 AAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHTLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRY 177          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX1_RABIT (Glutathione peroxidase 1 OS=Oryctolagus cuniculus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.872e-18
Identity = 59/170 (34.71%), Postives = 84/170 (49.41%), Query Frame = 2
Query:   89 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERY 523
            AA  +S+Y F+   +  G+ V L   +GKVLLI NVAS  G T  +Y++++ L E+   +   +L FPCNQFG QE   N EI       R    F+  F +F K +VNG   +P++ FL+ +      D                    V W+FEKFLV  +G  + RY
Sbjct:    7 AAAAQSVYSFSAHPLAGGEPVNLGSLRGKVLLIENVASLUGTTVRDYTQMNELQERLGPRALVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFQKCEVNGAKASPLFAFLREALPPPSDDPTALMTDPKFITWCPVCRNDVSWSFEKFLVGPDGVPVRRY 176          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX5_CANFA (Epididymal secretory glutathione peroxidase OS=Canis familiaris GN=GPX5 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.291e-18
Identity = 59/161 (36.65%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  104 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI----KEFACTR-FKAEFPIFDKVDVNGPNTAPVYQFLKSSA---GGFLGDL------------VKWNFEKFLVDKNGKVIERY 523
            ++Y++    ++G + +   ++  K +L VNVA+ CGLT + Y EL+ L E+ K  G  +L FPCNQFG Q PG N EI    K     R +   F +F+K DVNG     V+ FLK S       LG              ++WNFEKFLV  +G  + R+
Sbjct:   39 TIYEYEALTLNGNERIQFKQYPRKHVLFVNVATYCGLT-AQYPELNSLQEELKPLGLVVLGFPCNQFGKQGPGENSEILPGLKYVRPGRGYVPNFQLFEKGDVNGEKEQKVFTFLKLSCPHPSEVLGSFRHISWDPVKVHDIRWNFEKFLVGPDGVPVLRW 198          
BLAST of CX288921 vs. ExPASy Swiss-Prot
Match: GPX2_RAT (Glutathione peroxidase 2 OS=Rattus norvegicus GN=Gpx2 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 9.291e-18
Identity = 58/168 (34.52%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  101 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPT 532
            KS YD +   +DG+ +  + F+G+ +LI NVAS  G T  +Y++L+ L  ++  +   +L FPCNQFG QE   N EI       R    F+  F +  K DVNG N  PV+ +LK        D                    V WNFEKFL+   G+   RY  T
Sbjct:    6 KSFYDLSAIGLDGEKIDFNTFRGRAVLIENVASLUGTTTRDYTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRHGGGFQPTFSLTQKCDVNGQNQHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRT 172          
The following BLAST results are available for this feature:
BLAST of CX288921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX1_HYLLA2.211e-1934.71Glutathione peroxidase 1 OS=Hylobates lar GN=GPX1 ... [more]
GPX5_HUMAN2.888e-1938.51Epididymal secretory glutathione peroxidase OS=Hom... [more]
GPX1_BOVIN3.772e-1934.88Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=... [more]
GPX3_MOUSE4.927e-1939.75Glutathione peroxidase 3 OS=Mus musculus GN=Gpx3 P... [more]
GPXC_BRUPA1.433e-1835.33Cuticular glutathione peroxidase OS=Brugia pahangi... [more]
GPXC_BRUMA1.433e-1835.33Cuticular glutathione peroxidase OS=Brugia malayi ... [more]
GPX1_PANTR1.433e-1834.71Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX... [more]
GPX1_RABIT1.872e-1834.71Glutathione peroxidase 1 OS=Oryctolagus cuniculus ... [more]
GPX5_CANFA9.291e-1836.65Epididymal secretory glutathione peroxidase OS=Can... [more]
GPX2_RAT9.291e-1834.52Glutathione peroxidase 2 OS=Rattus norvegicus GN=G... [more]

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Properties
Property NameValue
Genbank descriptionC02006H11SK IF1 Citrus clementina cDNA clone C02006H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288921 ID=CX288921; Name=CX288921; organism=Citrus clementina; type=EST; length=535bp
AGGCTTTCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGT
TTTTCGTGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAG
AAGTCTTTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCC
TCTTAGCAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAA
GATGTGGCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAG
AAGTACAAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATT
TGGTGGGCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTA
CTAGGTTTAAGGCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGA
CCAAACACAGCTCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATT
TTTAGGCGACCTTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAA
ATGGTAAAGTCATCGAGAGATATCCACCAACTACC
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