CX288924

Overview
NameCX288924
Unique NameCX288924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: RPF1_YEAST (Ribosome production factor 1 OS=Saccharomyces cerevisiae GN=RPF1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 64/194 (32.99%), Postives = 105/194 (54.12%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRG-GQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 578
            F   L  + PN   + R  G  + EI + C    FTD+V+++E +    GL   HLP GPT YF L + V   ++K     G      P LIL+NF+++LG+    + + + P  P  + +++IT  NQ DYI FR H Y  +   + + L+E+GP+F L+L +++ G  +++    EW  +P M+  KK+ +L
Sbjct:  110 FANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFV---EVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRYVFKDNER-VGLQELGPQFTLKLKRLQRGIKEET----EWEHKPEMDKEKKKFYL 295          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: YDS4_SCHPO (Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe GN=SPAC4F8.04 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.412e-21
Identity = 63/183 (34.43%), Postives = 101/183 (55.19%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQV-ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDR-KSIGTMPEAYPHLILDNFKSKLGERTANILKHLF-PVPKADTKRIITFANQSDYISFRHHIY---EKQGGPKSL--ELKEIGPRFELRLYQIKLGTVDQSEAQI 527
            F  EL   FPNA+   R G + + EI E      +TD+++++E R   + L + HLP GP+ YF L N+ T  +I +  +S G +PE    LI++NF ++LG   A   + LF   P+   ++++T   Q D++ FR H Y   EK   P  +   L+E+GPRF +RL  ++ G  D+ E ++
Sbjct:  111 FASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNHGRSTGHIPE----LIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFFRRHRYAFREKSNMPDGIGTGLQELGPRFTMRLRMVQKGVWDRKEGEV 289          
The following BLAST results are available for this feature:
BLAST of CX288924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RPF1_YEAST2.845e-2232.99Ribosome production factor 1 OS=Saccharomyces cere... [more]
YDS4_SCHPO1.412e-2134.43Brix domain-containing protein C4F8.04 OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionC02007A03SK IF1 Citrus clementina cDNA clone C02007A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288924 ID=CX288924; Name=CX288924; organism=Citrus clementina; type=EST; length=617bp
AGTTTGTAAAGGAGTTGAAGTTTGTCTTTCCTAATGCACAAAGAATGAAT
CGTGGAGGCCAGGTCATATCTGAAATTATTGAAACTTGTCGTGCACATGA
GTTTACAGATGTTGTGTTGGTTCATGAACATCGTGGTGTGCCAGACGGTT
TAATAATATGTCATTTACCTTTTGGCCCAACTGCCTACTTTGGATTACTC
AATGTGGTTACCAGACATGATATTAAGGACAGAAAATCCATTGGTACAAT
GCCTGAGGCTTACCCACATCTGATTCTCGACAACTTCAAATCCAAGCTAG
GTGAAAGGACAGCAAACATTCTAAAACATCTATTTCCAGTGCCAAAGGCT
GATACCAAACGTATCATCACTTTTGCAAATCAGTCTGACTATATTTCATT
CAGGCATCATATATATGAGAAACAAGGAGGCCCAAAGTCACTTGAGCTGA
AGGAAATTGGTCCTCGGTTTGAATTGCGGCTTTATCAGATAAAGTTAGGA
ACAGTTGATCAGAGTGAAGCCCAGATCGAATGGGTAATCAGGCCTTACAT
GAACACAAGCAAGAAGCGAAAATTCCTTGGGGATTGACAACCAATCAACC
ACTAAAATGATATTGAG
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