CX288925

Overview
NameCX288925
Unique NameCX288925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: PGRC1_MOUSE (Membrane-associated progesterone receptor component 1 OS=Mus musculus GN=Pgrmc1 PE=1 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 1.853e-15
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  257 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEK 526
            + T  ELR +DG  DP   +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA    D + L    + LSD   ++ E L DW+ +F  K
Sbjct:   72 DFTPAELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFK 163          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: PGRC1_BOVIN (Membrane-associated progesterone receptor component 1 OS=Bos taurus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.853e-15
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  257 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEK 526
            + T  ELR +DG  DP   +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA    D + L    + LSD   ++ E L DW+ +F  K
Sbjct:   71 DFTPAELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFK 162          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: PGRC2_HUMAN (Membrane-associated progesterone receptor component 2 OS=Homo sapiens GN=PGRMC2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.161e-15
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  272 ELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEK 526
            +LR YDGS  N  +L+A+ G+++DV++   FYGP GPY +FAGRDASR LA    D   L    + LSD    ++E +++WE +F EK
Sbjct:  107 QLRQYDGSR-NPRILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEK 193          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: NENF_BOVIN (Neudesin OS=Bos taurus GN=NENF PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.161e-15
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  263 TEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQD 502
            TE EL  Y G + ++P+ MA+KG ++DV+  + FYG G PY    G+D++R +A MS DP DLT +  GL+  ELE L D
Sbjct:   45 TEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAEELESLDD 124          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: NENF_HUMAN (Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.201e-14
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  263 TEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQD 502
            TE EL  Y G + ++P+ +A+KG ++DV+  + FYG G PY    G+D++R +A MS DP DLT +  GL+  ELE L +
Sbjct:   48 TEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAKELEALDE 127          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: PGRC2_RAT (Membrane-associated progesterone receptor component 2 OS=Rattus norvegicus GN=Pgrmc2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.049e-14
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  272 ELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEK 526
            +LR YDG+   + +L+A+ G+++DV++   FYGP GPY +FAGRDASR LA    D   L    + LSD    ++E +++WE +F EK
Sbjct:  101 QLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEK 187          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: PGRC2_MOUSE (Membrane-associated progesterone receptor component 2 OS=Mus musculus GN=Pgrmc2 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.049e-14
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  272 ELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEK 526
            +LR YDG+   + +L+A+ G+++DV++   FYGP GPY +FAGRDASR LA    D   L    + LSD    ++E +++WE +F EK
Sbjct:  101 QLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEK 187          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: DAP1_YEAST (Damage response protein 1 OS=Saccharomyces cerevisiae GN=DAP1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 2
Query:  239 ETVQLGEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFD---PQDLTGNIEGLSD---SELEVLQDWEYKFMEK 526
            E V  G      L  ++G D  K + +AI+G++YD +R R FYGP GPY  FAG DASR LAL SFD    +D    I+ L D    +++ L +W+  F  K
Sbjct:   37 EPVVAGNFFPRTLSKFNGHDDEK-IFIAIRGKVYDCTRGRQFYGPSGPYTNFAGHDASRGLALNSFDLDVIKDWDQPIDPLDDLTKEQIDALDEWQEHFENK 137          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: DAP1_SCHPO (Cytochrome P450 regulator dap1 OS=Schizosaccharomyces pombe GN=dap1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 2
Query:  236 PETVQLGEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQ-------DLTGNIEGLSDSELEVLQDWEYKFMEK 526
            P+  +  + T  EL+ Y+GS  N  + +AIKG +Y+V+    FYGP GPY+ FAG DASR LA  SFD +       +   +   L+D E + L DW+  F +K
Sbjct:   35 PKQPEWRDYTPAELKEYNGSK-NSLVFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNSFDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQK 137          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: CB5D2_DANRE (Cytochrome b5 domain-containing protein 2 OS=Danio rerio GN=cyb5d2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.608e-13
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 2
Query:  260 VTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDW 505
            +T+ +L  Y+G   +K L +AI GQ++DV + R  YGPGG Y  F G+DASRA     F    L+ ++   S+S++  L DW
Sbjct:   54 LTKEQLSLYNGGKNSKGLYLAILGQVFDVEKGRKHYGPGGGYHFFTGKDASRAFITGDFTEAGLSNDVSDFSESQIVALYDW 135          
The following BLAST results are available for this feature:
BLAST of CX288925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PGRC1_MOUSE1.853e-1546.81Membrane-associated progesterone receptor componen... [more]
PGRC1_BOVIN1.853e-1546.81Membrane-associated progesterone receptor componen... [more]
PGRC2_HUMAN3.161e-1545.45Membrane-associated progesterone receptor componen... [more]
NENF_BOVIN3.161e-1546.25Neudesin OS=Bos taurus GN=NENF PE=2 SV=1[more]
NENF_HUMAN1.201e-1443.75Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1[more]
PGRC2_RAT2.049e-1443.18Membrane-associated progesterone receptor componen... [more]
PGRC2_MOUSE2.049e-1443.18Membrane-associated progesterone receptor componen... [more]
DAP1_YEAST5.046e-1341.18Damage response protein 1 OS=Saccharomyces cerevis... [more]
DAP1_SCHPO6.591e-1339.42Cytochrome P450 regulator dap1 OS=Schizosaccharomy... [more]
CB5D2_DANRE8.608e-1340.24Cytochrome b5 domain-containing protein 2 OS=Danio... [more]

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Properties
Property NameValue
Genbank descriptionC02007A04SK IF1 Citrus clementina cDNA clone C02007A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288925 ID=CX288925; Name=CX288925; organism=Citrus clementina; type=EST; length=527bp
AGCTTACACAATGGTGGCGTTTTTCGCAGCGGTGATGGACACGGTCACCA
GCTACACCGGACTATCACCGGCGGCTTTCTTCACAATCCTGGCCCTTATG
TGCGTGGTTTATAAAACGGTTTGTAGCATGTTCGTTGACCCAGAGCCGCC
AGAAGACTTGAAGAACAAGCTCATCAGCTCCAGCGCCGCGGCGTAGGCGG
CGACGGCGGCTAACTTTTCGAACCAAACGGTGATCCCCGAAACGGTGCAG
CTAGGAGAAGTCACTGAACATGAGTTGAGAGCTTATGATGGTTCTGACCC
TAATAAGCCTCTTTTGATGGCTATCAAGGGACAAATCTACGACGTCTCTC
GCTCCAGGATGTTCTATGGACCTGGAGGGCCATATGCAATGTTTGCTGGA
AGGGACGCCAGTAGAGCCTTAGCTCTTATGTCTTTTGACCCTCAAGACCT
AACTGGGAATATTGAAGGCCTTAGTGATTCTGAGCTTGAAGTTCTGCAAG
ATTGGGAATATAAATTCATGGAAAAAT
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