CX288925

Overview
NameCX288925
Unique NameCX288925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: CB5D2_CAEBR (Cytochrome b5 domain-containing protein 2 homolog OS=Caenorhabditis briggsae GN=tag-131 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.608e-13
Identity = 35/81 (43.21%), Postives = 47/81 (58.02%), Query Frame = 2
Query:  263 TEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDW 505
            T  +L  +DGS  +KP  +AI G++YDV   + +YGPG  Y  FAGRDA+RA     F    L  +  GLS  EL  ++DW
Sbjct:  102 TPEQLHFFDGSRDSKPCYLAILGRVYDVDGKKEYYGPGKSYHHFAGRDATRAFTTGDFTENGLVASTHGLSHDELLSIRDW 182          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: CB5D2_CAEEL (Cytochrome b5 domain-containing protein 2 homolog OS=Caenorhabditis elegans GN=tag-131 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 2
Query:  263 TEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDW 505
            T  +L  +DG+  +KP+ +AI G++Y+V   + +YGPG  Y  FAGRDA+RA     F    L     GLS  EL  ++DW
Sbjct:  102 TPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTGDFQESGLIATTHGLSHDELLSIRDW 182          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: CB5D2_XENTR (Cytochrome b5 domain-containing protein 2 OS=Xenopus tropicalis GN=cyb5d2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 2
Query:  230 VIPETVQLGE---VTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDW 505
            + P+  +L E   +++ EL  YDG   +  + +AI GQ++DV +    YGPGG Y+ FAG+DASRA     F  + L  ++  LS  ++  L +W
Sbjct:   34 IFPQQCELSEGRLMSKEELSVYDGGPGSSGIYLAILGQVFDVHKGSKHYGPGGSYSFFAGKDASRAYMTGDFTEKGLVDDVTELSPLQMLHLHNW 128          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: CB5D2_MOUSE (Cytochrome b5 domain-containing protein 2 OS=Mus musculus GN=Cyb5d2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.616e-11
Identity = 37/85 (43.53%), Postives = 47/85 (55.29%), Query Frame = 2
Query:  272 ELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYKFMEK 526
            EL  Y G   +  L +A+ G++YDVS  R  Y PG  Y+ FAGRDASRA     +    L  +I GLS SE+  L +W   F EK
Sbjct:   42 ELARYRGGPGDPGLYLALLGRVYDVSSGRRHYEPGAHYSGFAGRDASRAFVTGDYSEAGLVDDINGLSSSEILTLHNW-LSFYEK 125          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: CB5D2_RAT (Cytochrome b5 domain-containing protein 2 OS=Rattus norvegicus GN=Cyb5d2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 36/85 (42.35%), Postives = 47/85 (55.29%), Query Frame = 2
Query:  272 ELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYKFMEK 526
            EL  Y G   +  L +A+ G++YDVS  R  Y PG  Y+ FAGRDASRA     +    L  ++ GLS SE+  L +W   F EK
Sbjct:   42 ELARYRGGPGDPGLYLALLGRVYDVSSGRKHYEPGAHYSGFAGRDASRAFVTGDYSEAGLVDDVNGLSSSEILTLHNW-LSFYEK 125          
The following BLAST results are available for this feature:
BLAST of CX288925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CB5D2_CAEBR8.608e-1343.21Cytochrome b5 domain-containing protein 2 homolog ... [more]
CB5D2_CAEEL4.272e-1240.74Cytochrome b5 domain-containing protein 2 homolog ... [more]
CB5D2_XENTR1.243e-1135.79Cytochrome b5 domain-containing protein 2 OS=Xenop... [more]
CB5D2_MOUSE3.616e-1143.53Cytochrome b5 domain-containing protein 2 OS=Mus m... [more]
CB5D2_RAT4.723e-1142.35Cytochrome b5 domain-containing protein 2 OS=Rattu... [more]

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Properties
Property NameValue
Genbank descriptionC02007A04SK IF1 Citrus clementina cDNA clone C02007A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288925 ID=CX288925; Name=CX288925; organism=Citrus clementina; type=EST; length=527bp
AGCTTACACAATGGTGGCGTTTTTCGCAGCGGTGATGGACACGGTCACCA
GCTACACCGGACTATCACCGGCGGCTTTCTTCACAATCCTGGCCCTTATG
TGCGTGGTTTATAAAACGGTTTGTAGCATGTTCGTTGACCCAGAGCCGCC
AGAAGACTTGAAGAACAAGCTCATCAGCTCCAGCGCCGCGGCGTAGGCGG
CGACGGCGGCTAACTTTTCGAACCAAACGGTGATCCCCGAAACGGTGCAG
CTAGGAGAAGTCACTGAACATGAGTTGAGAGCTTATGATGGTTCTGACCC
TAATAAGCCTCTTTTGATGGCTATCAAGGGACAAATCTACGACGTCTCTC
GCTCCAGGATGTTCTATGGACCTGGAGGGCCATATGCAATGTTTGCTGGA
AGGGACGCCAGTAGAGCCTTAGCTCTTATGTCTTTTGACCCTCAAGACCT
AACTGGGAATATTGAAGGCCTTAGTGATTCTGAGCTTGAAGTTCTGCAAG
ATTGGGAATATAAATTCATGGAAAAAT
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