CX289099

Overview
NameCX289099
Unique NameCX289099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289099 vs. ExPASy Swiss-Prot
Match: ISPH_PROMA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus GN=ispH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.958e-22
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  188 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI 466
            D + F+ +L  SD YNRRGF    +  + + + Y S++I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E IWITNEI
Sbjct:    2 DTQAFKRSLHHSDRYNRRGFESPAKRAQALEKAYQSNLIASIRDNGYLLEHGRLRVKLAEAFGFCWGVERAVAMAYETRRHYPTESIWITNEI 94          
BLAST of CX289099 vs. ExPASy Swiss-Prot
Match: ISPH_GLOVI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Gloeobacter violaceus GN=ispH PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.517e-18
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  218 RSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI 466
            +S NY R+GFG K E  + +  EY S +I +++ NG+    G V V+LAE++GFCWGV++AV +AYE  + F   ++WITNEI
Sbjct:    2 QSKNYFRKGFGLKAEVQDDLKAEYESSLIHEIRANGYTLRRGGVTVRLAEAFGFCWGVDKAVSMAYETHRMFAGRQLWITNEI 84          
BLAST of CX289099 vs. ExPASy Swiss-Prot
Match: ISPH_SYNY3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=ispH PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 4.670e-16
Identity = 34/65 (52.31%), Postives = 51/65 (78.46%), Query Frame = 2
Query:  272 LMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI 466
            +MN EY S +I+++++N +    G+V + LAE++GFCWGVERAV +AYE R+ FP +++WITNEI
Sbjct:    3 VMNTEYQSHLIQEIRQNNYRLERGDVTILLAEAFGFCWGVERAVAMAYETRQHFPGDRLWITNEI 67          
The following BLAST results are available for this feature:
BLAST of CX289099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_PROMA1.958e-2248.394-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GLOVI6.517e-1846.994-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNY34.670e-1652.314-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC02009B04SK IF1 Citrus clementina cDNA clone C02009B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289099 ID=CX289099; Name=CX289099; organism=Citrus clementina; type=EST; length=467bp
GAATCCGTGAATCTCCCTCATCATGGCGACGACTCTGCAATTCTGCCGTG
TTTGCGCGCGAACTGACATAGGTTCGCGCAGTAATAATCGCTCCGGAGCG
CTGGCTCCGCCGCGCCGGAGGCCTGTGATCGTCAGGTGCTCCGGTGAAAA
ATCGCCGAGCTCGGCGGCGGCTATTGGTGCCGAATTTGACGCGAAACTGT
TTCGGCATAACTTGACGAGAAGTGATAATTACAATCGGAGAGGATTTGGC
CACAAGGAAGAGACTTTGGAGCTCATGAATCAGGAGTACACAAGTGATAT
TATAAAGAAATTGAAGGAGAATGGATTTGAGTATACTTGGGGAAATGTTA
AGGTGAAGCTGGCCGAATCATATGGCTTTTGCTGGGGAGTTGAGCGTGCT
GTGCAGATTGCTTATGAAGCAAGAAAACAGTTTCCTGAGGAGAAGATCTG
GATTACCAATGAAATCA
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